Query= MSMg01no098_e06.b1 MSMg01no098_e06.b1 CHROMAT_FILE:
MSMg01no098_e06.b1 PHD_FILE: MSMg01no098_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:19 2005
(513 letters)
>mm_chr4_98316881_98317789
Length = 909
Score = 816 bits (422), Expect = 0.0
Identities = 477/500 (95%), Gaps = 10/500 (2%)
Strand = Plus / Minus
Query: 7 gaattccatccttccttccttcgcctatatccctttgagactagattcctgaaggcccag 66
|||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct: 861 gaattccatccttccttccttcgcctatatccttttgagactagattcct--ag----tg 808
Query: 67 gctggccttgaattcactatgtagcaaaggatgaccttaaattcctgaacctccgacctc 126
||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||
Sbjct: 807 gctggccttgaattcactatgtagctaaggatgaccttaaattcctgagcctcctacctc 748
Query: 127 catttcttaagtgcttggattgtaggtgccaccatgcctggctctgaacaccaactccct 186
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tatttcataagtgcttggattgtaggtgccaccatgcctggctctgaacaccaactccct 688
Query: 187 tactgaatcacaaatcttcaaatggcttatatcaactatatatattgttgaaaactggct 246
||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 687 tactgaatcacaagtcttcaaatggcttatatcaa----atatagtgttgaaaactggct 632
Query: 247 tcattatgattttggaatcattatttatgacttaactttaatctttgggagagactggta 306
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 631 tcattatgattttggaatcattatttatgacttaacttttatctttgggagagattggta 572
Query: 307 ggcaatctgtaggccttcgtttcatcaaatgcttacatggagagccttttctgtttgtgt 366
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggcaatctgtaggcctttgtttcatcaaatgcttacatggagagccttttctgtttgtgt 512
Query: 367 gtgtattcagtagtggggcgttcaagctcaaaggtaaggaagcagaggaggcccaggcag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtgtattcagtagtggggcgttcaagctcaaaggtaaggaagcagaggaggcccaggcag 452
Query: 427 ctagctgtcctgcatccccatctcactggtaaggaagcagaggaggcccaggcagctagc 486
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctagctgtcctacatccccatctcactggtaaggaagcagaggaggcccaggcagctagc 392
Query: 487 tgtcctgcatccccatctta 506
||||||||||||||||||||
Sbjct: 391 tgtcctgcatccccatctta 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 909
Length adjustment: 10
Effective length of query: 503
Effective length of database: 899
Effective search space: 452197
Effective search space used: 452197
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_e06.g1 MSMg01no098_e06.g1 CHROMAT_FILE:
MSMg01no098_e06.g1 PHD_FILE: MSMg01no098_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:19 2005
(290 letters)
>mm_chr4_98217580_98218269
Length = 690
Score = 545 bits (282), Expect = e-160
Identities = 288/290 (99%)
Strand = Plus / Plus
Query: 1 caggagggaagtagggccactatcagacatgcttgggagtgtttctttacacaatcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggagggaagtagggccactatcagacatgcttgggagtgtttctttacacaatcacca 260
Query: 61 gcaatccaagttcagaattgctatggttttcactttacatatgagacactctagtaaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gcaatccaagttcagaattgctatggttttcactttacatatgagacactctagtaaggc 320
Query: 121 tcatcaaagcagccctaagttcttaactgctactggcagagctgggtttgggtccaaata 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatcaaagcagccctaagttcttaactgctactggcagagctgggtttgggtccaaatc 380
Query: 181 caaaccccaacaccaaggtcttcttccttggctttgttgatgaagctgagcactcaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaccccaacaccaaggtcttcttccttggctttgttgatgaagctgagcactcaagtt 440
Query: 241 tcagacctagagatttaggggatcagatagctctagctcccccgaagctc 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagacctagagatttaggggatcagatagctctagctcccccgaagctc 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
