BAC Information

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BAC

Clone NameMSMg01-098G23
Chromosome4 (Build37)
Map Location 107,278,194 - 107,438,981
singlet/doubletdoublet
Overlap geneGlis1, Dmrtb1, LOC100039889, LOC433743
Upstream geneBC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48
Downstream gene4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098G23.T7 (MSMg01no098_g23.b1)MSMg01-098G23.TJ (MSMg01no098_g23.g1)
ACCAG314617AG314618
length778788
length of high quality
(start - end)
206 (121 - 326)261 (160 - 420)
definitionCHROMAT_FILE: MSMg01no098_g23.b1 PHD_FILE: MSMg01no098_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:33 2005CHROMAT_FILE: MSMg01no098_g23.g1 PHD_FILE: MSMg01no098_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,278,194 - 107,278,399)(107,438,721 - 107,438,981)
sequence
NNNNNNNGGGCGNGGNNNGGGGCGGCCCCCCGCCTCCCCCCTTTTTTTCT
CTCTATTTTTGCGGCGGTAATANGATCACATTCGGAGCGGGGCGCGGAAT
CAGTAGTTCCCAACAAAACAGGGAAGCCAGCAGGAGAGTGGGGCGGGGTA
TATGGAGGAGAGGAGGCCTCCCTAGTTTGGATCCTGGACAATAGCTTCCT
CCTGGATCAAGCTGCAGACGCCACTTTCTATCCTCAGCCCTGTTGGCAGT
CTCGGGGTCCTGCCTGGGCCCAAGTGCTAAGCACCAGTTTCTTTTCTTTG
AACTCTGGGTACCCAGGTCACAGCTGAGCGGCTCAGTGCAGAGGCACCCT
TCTCTTTTTGTCTTTTTTTGTGACCGAAGCCAAAGCTTAAGTTTTAATTT
CACATTATTCCCGACCTAACGCTACTGATTTCCAGCCGTCCCCTGAGTCG
GGGTTGTGCGGCTCCGTTGAGTTAGGCTGCTGTTTAGCTGGCTTCTTATA
AAGTACTTCATGTCTCCGGATCGCAGAGGACCGCGCTGCATCGGTCCGCT
TCCTCTCAGGTTTTTGCTTATCCCTCAACCATACTTCTTTGGCCTTCATT
GCAGCCGTTCCGGCCTGTCTGCCTTCCTTGCGCATCTCTCTGGTTTGATC
TATTTTCCTTCCCTGAATTTCGTGGACATACCTATGCTCTCCCTTTTGTC
CCATTTCTGTTTTTTTTCCCTCCCCGCCTCTATAAATGTCGTTTCAAGGA
TGTGCTTCCTTATACCCCCTGACTTCTA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCACCCTCT
TGTTTTTTTCCTATGAAGTGGGTAGGACTGGNGAACGCCTGTTCATACCA
GTGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGGAATGTG
GGTGGATCTGATGGTTTTTGCTTCTCAATGCATAAGATGCTTAGGACTCA
ACTAGTGGAAGGCGTAGTTTAGCCCCTAACTATTGTAGGTATGGGCTTAC
ATTTACTCATTTGTATAAGTGTACTCGTGTGTGTGCAGAGTTCAGGGGAC
AACTTTTCGTAGTCCTTTTTGTCTTTCTACCATATGAGAACCAGGGATCT
AACTCAGGGTGTCAGGCTTGGCGGCATGTGTTTTTCATTTGTGATGATGA
ATCAGCTCAGGTTGTAGTTTAAAGAAAGCTTAAAGTTTATGGCTGTTCCT
TCCTCTCCTTCTTGGCTTATGGCTCATCTGCTTCTGTGCGTCCATGCTGC
GGATGCGTAGAGGTAAGTAATTTGAAATCTTCCTTTAAAGTCCTGTGTCC
CAGTCCCTTGATACAGGATTTCCCACTGAACCTTGACCCCGAGGGTTTTT
CAGCTGGGTTGTCTGTGCCCACTGGGTGTTTTCAGTGGGTTCCGAACTCC
ATTTCATTCTGCTTTGCATATCCGCTCTTACTCTCTGTGTGGACCCCCTT
CTCTCTCTCTCTTTTCCTTCCTCCATTCTTCCGATCGCTCTTCCCTCATT
TTCTTACGCCCCCCAAACCCTATTCACCCATTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_g23.b1 MSMg01no098_g23.b1 CHROMAT_FILE:
MSMg01no098_g23.b1 PHD_FILE: MSMg01no098_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:33 2005
         (206 letters)



>mm_chr4_107277994_107278599
          Length = 606

 Score =  391 bits (202), Expect = e-113
 Identities = 205/206 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggaagccagcaggagagtggggcggggtatatggaggagaggaggcctccctagtttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggaagccagcaggagagtggggcggggtatatggaggagaggaggcctccctagtttgg 260

                                                                       
Query: 61  atcctggacaatagcttcctcctggatcaagctgcagacgccactttctatcctcagccc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctggacaatagtttcctcctggatcaagctgcagacgccactttctatcctcagccc 320

                                                                       
Query: 121 tgttggcagtctcggggtcctgcctgggcccaagtgctaagcaccagtttcttttctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttggcagtctcggggtcctgcctgggcccaagtgctaagcaccagtttcttttctttg 380

                                     
Query: 181 aactctgggtacccaggtcacagctg 206
           ||||||||||||||||||||||||||
Sbjct: 381 aactctgggtacccaggtcacagctg 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no098_g23.g1 MSMg01no098_g23.g1 CHROMAT_FILE:
MSMg01no098_g23.g1 PHD_FILE: MSMg01no098_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:33 2005
         (261 letters)



>mm_chr4_107438665_107439325
          Length = 661

 Score =  443 bits (229), Expect = e-129
 Identities = 253/261 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatggtttttgcttctcaatgcataagatgcttaggactcaactagtggaaggcgtagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 317 gatggtttttgcttctcaatgcataagatgcttaggactcaactagtgggaggcatagtt 258

                                                                       
Query: 61  tagcccctaactattgtaggtatgggcttacatttactcatttgtataagtgtactcgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 257 tagcccctaactattgtaggtatgggcttacatttactcatttgtgtgagtgtactcgtg 198

                                                                       
Query: 121 tgtgtgcagagttcaggggacaacttttcgtagtcctttttgtctttctaccatatgaga 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgtgtgcagagctcaggggacaacttttcgtagtcctttttgtctttctaccatatgaga 138

                                                                       
Query: 181 accagggatctaactcagggtgtcaggcttggcggcatgtgtttttcatttgtgatgatg 240
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 137 accagggatctaactcagggtgtcaggcttggcggcatgtgcctttcatttgtgatgatg 78

                                
Query: 241 aatcagctcaggttgtagttt 261
           |||||||||||| ||||||||
Sbjct: 77  aatcagctcaggctgtagttt 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)