BAC Information

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BAC

Clone NameMSMg01-098I24
Chromosome4 (Build37)
Map Location 49,732,448 - 49,732,719
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098I24.T7 (MSMg01no098_i24.b1)MSMg01-098I24.TJ (MSMg01no098_i24.g1)
ACCAG314710AG314711
length769777
length of high quality
(start - end)
272 (184 - 455)203 (192 - 394)
definitionCHROMAT_FILE: MSMg01no098_i24.b1 PHD_FILE: MSMg01no098_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:43 2005CHROMAT_FILE: MSMg01no098_i24.g1 PHD_FILE: MSMg01no098_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNCCCCCCNCCCCNNNCCCACCCCCCCCCCCTNNNNNNTTGAATT
AANCCAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTACTATTCCGTCAACAAGATGACTAAAGTAAAGGAAA
TTGCCACCAACCATGATGAACTGATTTTCCCTTCCAAGACCCACATAGTG
GAAGGAAATACGTGATTCCTACAGGCTGTCCCCTGACCTCCAAATGCACA
TCATGGACTGTGTGTCTCCCCACCTCACCCCCCTAGCAAAAACAAAAACC
ACACAAAACAATCAAACAACAACAAAACATGTATGTAAGTGTAGAAACAT
TCTTGAAAAAATAGAAAAACATTCACTGGGTTTTCAATGTGAAACAAAAT
AACTGTTTCTACATTCATTTTGTCATTCACATCTCTTTCCTTCTGAGGCT
AGAACAACCACTGCTGTGCCCCCCACTACAATAAAGCATATATCTGTAGG
TCTGCACTCTGTGTGAATGTTAGTGCCTCCAGGTGTTTGAAATATGCTCA
GCTGTTGAATTGTGAATACCACTGGGAGATTCAAAGATTTTAACTGAGTA
CTGAACATTACAGCCCTTTCCTTTTCTCCCCTGGTAGCTTCATCATCCTT
CTTTAGTGTTTCGTCTTGCAACTGCCCCGTCAAATTACCGCTTTACGAAT
ATGCTCTTTTAACCTTCCCCCCACTATGCTTTGACTTACCGAAAATCTAC
AATGTCCCACCCACTCCCG
TTTTNNNNNNNNNNNNNNNNNTTTTTTTTNNNNCCCCCCCTTNTTTTTAG
ATTAATACTTAATCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTCAGAAGAAATTCAGAACTCTTC
AGCTGAGGAACGGCGGTACCGGTAAGTAGAATTAACCCAATGTGAGTCTC
TGAGAAGCATGCTCTCCTAAGAAATAGGATCTCGGTAAAGAGAAAAATAG
GATCTCCGGCTCTGGAGACAAGAAAGTGAAAGTAAGAGAGAAAGTGAAAG
TAAGAGGAAAGTGAAAGTAAGAGGATAATAGGCACAGTCTATGGGTTACT
TTCTTTTTCTAGCCATTGGAGAAATTTTTCTGATTTTTTTTTGATGCTGA
GGCGACTGTGTGGAACATGATTTATTATTTATGCGCCCATCACTGTCTCA
CCCAATTTTTTCTGCGCTCGATGAGTTGCTTACATTGACAAAAAGCATAA
CTTTGTCTTTTGGGTTTTATTCAACCTTCTGTATCTCCATGGACTACCCA
AAATTTTGTCTATCTGAAAGAAAATCTTGCCTATGTAGGTTGTTACCGGC
ATTTGTTTGCTTTTAATGGTCTTATGCCAGCGATTGCTTTCCTTTTTAAT
GGAACTGACTTACATTATCTGATTCTGCAAAAAAGAGTTTCTCTAAAATA
TTGTTACTTCATCCATTCTTTCTAACATTATTTTTTTACTTTTTTTTGTG
TTTTCCCCCCGTTCCACCTTTTTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_i24.b1 MSMg01no098_i24.b1 CHROMAT_FILE:
MSMg01no098_i24.b1 PHD_FILE: MSMg01no098_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:43 2005
         (272 letters)



>mm_chr4_49732175_49732846
          Length = 672

 Score =  495 bits (256), Expect = e-144
 Identities = 268/272 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaagacccacatagtggaaggaaatacgtgattcctacaggctgtcccctgacctccaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 545 ccaagacccacatagtggaaggaaatacgtgattcctataggctgtcccctgacctccaa 486

                                                                       
Query: 61  atgcacatcatggactgtgtgtctccccacctcacccccctagcaaaaacaaaaaccaca 120
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 485 atgcatatcatggactgtgtgtctccccaccttacccccctagcaaaaacaaaaaccaca 426

                                                                       
Query: 121 caaaacaatcaaacaacaacaaaacatgtatgtaagtgtagaaacattcttgaaaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 caaaacaatcaaacaacaacaaaacatgtatgtaagtgtagaaacattcttgaaaaaata 366

                                                                       
Query: 181 gaaaaacattcactgggttttcaatgtgaaacaaaataactgtttctacattcattttgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 365 gaaaaacattcactgggttttcaatgtgaaacaaaataactgtttctacattcagtttgt 306

                                           
Query: 241 cattcacatctctttccttctgaggctagaac 272
           ||||||||||||||||||||||||||||||||
Sbjct: 305 cattcacatctctttccttctgaggctagaac 274


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)