BAC Information

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BAC

Clone NameMSMg01-098K10
Chromosome4 (Build37)
Map Location 135,115,382 - 135,115,883
singlet/doubletsinglet
Overlap geneGrhl3
Upstream geneMan1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik
Downstream gene1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098K10.T7 (MSMg01no098_k10.b1)MSMg01-098K10.TJ (MSMg01no098_k10.g1)
ACCAG314777AG314778
length642758
length of high quality
(start - end)
492 (29 - 520)240 (130 - 369)
definitionCHROMAT_FILE: MSMg01no098_k10.b1 PHD_FILE: MSMg01no098_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:50 2005CHROMAT_FILE: MSMg01no098_k10.g1 PHD_FILE: MSMg01no098_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGTCCGCGGAATTCTCCATCTCCCTTCAGATCCCAGCCTGGAGTTCACC
AGGAGAGGCTAGACTGTAAAATAAAATCCCCGCAAGAGGTCATTTTCAGG
GCTGTGCCTCCGCCCCTCAACCCTGCTCAGTGTACCAACAGTTCTCTCTG
AGGCTGGTATGCGGGCCAGAGGTGGTCAGTGCCTTGTCCAAGGACACACA
GCCAATATGCGGTAGATCTAGGAAGGGAGTCAAGAAATGGACTTAGAGTC
TATGTAGAAATAAAATGTGAAGTCTACACTCCTTGAAGCAGAGTTTCTGA
CCCTTGCTATCCCTACCTAGGTCATACTAGTGACAGTAATAGCCGTTCAG
GGTAATGAGAAACATTAAATTAGAAGCATTTTATACAAGGTCTCACTTGT
TAGAAGTGTTCTTTTTGAAAAAGCTGCTGGTTTTGTTTTGTTTTGTTTTG
TTTTGAATCTATAGCTTTAGGCTTTCCTTGAAGCAGGAGTTCTAATCCCC
TATTTAACGTTTGAAGGAATTGGGTCTCAGAGAGGTGCACTCGGTTAGCC
AGAGCCACACCGCACTTTTAGGTGCTGAAGCAXXXXXXXXXXXXXXXXXX
XXXGCCCACTAGCAGGCTCTCAATTACACAAGCCAGTGAGGT
NNCCCCNNNCCCCCCCCCCCCCCCCCCCCNCNCCCCCCCNNNNCCCTGTT
ATTTTTTCTCTATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACCTGTCAGCCAAGGAGG
GGGCAGAGGCAGCAGCAGAGACGCAGAAACTCAAGGTATGTTTTGTTTTT
GTTTTAATTATTTTAGGCTGGAGGGATGGCTTAGAGGTTTAGGGCACTTG
CTGCTCTCGCAGAGGACCTGGCTTCAATTCCCAGCACCCACACAGTGGTT
CATTCCCACCCCTAACTCCAGTTCTAGGGGATCCAATGCTCTCTGAGCAC
CAGGCACAGACATAAGCACATACCATCAGGCAGGCAAAACACTCTCACAG
GACGTAAAATGGGTAACTTTAATAAGCAATGTTTTAAAGATTATTTACTA
TTATTATTAGTAGTAGCACCATGTATGTCTATGTGAGTTTGTGTGCTCAA
GTATATGTGTCCGTTATTATTACAAGTAGTGTTTGTGTGCATGTGCATAT
ACATGCATGTATCACCTATTACAACCACCGTTTGTGTCGCTATGTATGCG
TGTGGTCCCATTACCTACGTGTGTCCTATTTGTGCCCCTCCCCTTTTCAC
CTGTCCTTCATTTCCCTCTCCCCCCCCCTTTCATTTCTACACCCATTATC
CTCCTCCTCTTCACTCCCTTTTATTTTCCCTCCCTTCCTCCCCCCTTTCC
CTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_k10.b1 MSMg01no098_k10.b1 CHROMAT_FILE:
MSMg01no098_k10.b1 PHD_FILE: MSMg01no098_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:50 2005
         (492 letters)



>mm_chr4_135115057_135115948
          Length = 892

 Score =  913 bits (472), Expect = 0.0
 Identities = 490/502 (97%), Gaps = 10/502 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatcccagcctggagttcaccaggagaggctagactgtaaaataaaatccccgcaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 agatcccagcctggagttcaccaggagaggctagactgtaaaataaaatccccgcaagag 768

                                                                       
Query: 61  gtcattttcagggctgtgcctccgcccctcaaccctgctcagtgtaccaacagttctctc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 767 gtcattttcagggctgtgcctctgcccctcaaccctgctcagtgtaccaacagttctctc 708

                                                                       
Query: 121 tgaggctggtatgcgggccagaggtggtcagtgccttgtccaaggacacacagccaatat 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgaggctggtattcgggccagaggtggtcagtgccttgtccaaggacacacagccaatat 648

                                                                       
Query: 181 gcggtagatctaggaagggagtcaagaaatggacttagagtctatgtagaaataaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gcggtagatctaggaagggagtcaagaaatggacttagagtctatgtagaaataaaatgt 588

                                                                       
Query: 241 gaagtctacactccttgaagcagagtttctgacccttgctatccctacctaggtcatact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gaagtctacactccttgaagcagagtttctgacccttgctatccctacctaggtcatact 528

                                                                       
Query: 301 agtgacagtaatagccgttcagggtaatgagaaacattaaattagaagcattttatacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agtgacagtaatagccgttcagggtaatgagaaacattaaattagaagcattttatacaa 468

                                                                       
Query: 361 ggtctcacttgttagaagtgttctttttgaaaaagctgctg----------gttttgttt 410
           |||||||||||||||||||||||||||||||||||||||||          |||||||||
Sbjct: 467 ggtctcacttgttagaagtgttctttttgaaaaagctgctggttttgttttgttttgttt 408

                                                                       
Query: 411 tgttttgttttgttttgaatctatagctttaggctttccttgaagcaggagttctaatcc 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgttttgttttgttttgaatctatagctttaggctttccttgaagcaggagttctaatcc 348

                                 
Query: 471 cctatttaacgtttgaaggaat 492
           ||||||||||||||||||||||
Sbjct: 347 cctatttaacgtttgaaggaat 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)