BAC Information

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BAC

Clone NameMSMg01-099B01
Chromosome4 (Build37)
Map Location 22,198,961 - 22,199,319
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379
Downstream geneFbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099B01.T7 (MSMg01no099_b01.b1)MSMg01-099B01.TJ (MSMg01no099_b01.g1)
ACCAG315088AG315089
length787674
length of high quality
(start - end)
46 (223 - 268)359 (58 - 416)
definitionCHROMAT_FILE: MSMg01no099_b01.b1 PHD_FILE: MSMg01no099_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:22 2005CHROMAT_FILE: MSMg01no099_b01.g1 PHD_FILE: MSMg01no099_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTTAACTCCGGCATAGCGCGTGTTCTTGTTTGTATTAATTTTAGACCT
TGCTCTGTTGCCCCTCCCTTCCCCTCTAXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCGCGCGATTCACTGTTCTCCCATTACTGTG
GAAGCTTGAGTCAAGCATAGGGAAATAATTTCTTTATAGCGAGGACACTA
CTGTCATTTTGATTAGTAATCCCTGCTCTATTCTCATATGTAAACTCTTT
TGTAACTGAAAATTCTTCTGGTTTAATTTCTCTATTGATCAACTTTGGAA
ACACTGAATTACAATACATACAATTTTAACTATGAGTACGTATGTATGTC
CGCATGTATGCATGCATGCATGTATGCGTACGTACATATATCCACACTCT
TTTTCACACACACATACACATTTTCTATTTCTAACTCAAGCTGTGCCCTC
ACCCCTGATTTCTTATACAATCACGTTTCAACTTAACTACCATGCCGTTT
TATTTTACCCTACAATATTTTGATGTACATTAATATACGTGCTTTATCAT
CTTTATTGCCACACCGCCGTCATATTTACCCCCTTTACTGTTCCTGCCTG
CCATCTAACCTGACATCGCTTTTTTCTTGCCTACCCTCCCCCTTATCTTC
TGGCAGTTTCTTTATTACACTATCTCGTTACCTCTCCTTTCCTATTCATT
CGCCCTCTCCACTTTACCCCCTTTTTTCTATCCCCTTCTTTTTATTGCAC
CCCTCTTAATACATGCTTATTGTCTCTGTTTATTATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTAATGAAGAAACAAGGTGATTTTTTAAGGGTGACAGTTAATGT
ATCAGTGACATATGTTAGTGGATATTTTTATTCTGTCCTTCAACTTCTTG
AAACTGTGTGTTTTTGAGGTATAACTTTCTGATTTAATGTTAAATACTTT
TTTGAGACGTTTATATCAATTAAATCTTACCAGCCAACTTCATATGCTGC
AAATAAACTATCATAAATTGATAACAGATATTTCATGAGCTTATAGCCTG
CATATAATAATATGCGCCAGTATTTGTCATATATTACATGTCCTGATGCG
GTTCAAAAGAATTATTGGTCATAAGTTTTCCCAGCGAAGGAACTGACAAT
GTACACAATTAAGTAAAATTACCCTTTCATGAAAGTAATGTTTCTGTTAG
GATTTTTTCTCTCTTTTTAAATTTCTGAACAATCAAGTTTTCTTTTCTTT
TTCTTTCTTTCCTTTTGTTGCTTTTTTTTTTTGTTGCCGTTGTTGTTGTT
GTTTGCTCGCCTTTTTGTGGTTTTTTTCCCCTTTATAAACCCCCTCCCTA
CCCTTAATTATTCCCCTTCTTTTTCTCTCCCTACTTTTTTCTCCCCCCCC
TCCCCCCCCCTTTCTTCTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_b01.g1 MSMg01no099_b01.g1 CHROMAT_FILE:
MSMg01no099_b01.g1 PHD_FILE: MSMg01no099_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:22 2005
         (359 letters)



>mm_chr4_22198761_22199519
          Length = 759

 Score =  632 bits (327), Expect = 0.0
 Identities = 351/359 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgaagaaacaaggtgattttttaagggtgacagttaatgtatcagtgacatatgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgaagaaacaaggtgattttttaagggtgacagttaatgtatcagtgacatatgtta 260

                                                                       
Query: 61  gtggatatttttattctgtccttcaacttcttgaaactgtgtgtttttgaggtataactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggatatttttattctgtccttcaacttcttgaaactgtgtgtttttgaggtataactt 320

                                                                       
Query: 121 tctgatttaatgttaaatacttttttgagacgtttatatcaattaaatcttaccagccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgatttaatgttaaatacttttttgagacgtttatatcaattaaatcttaccagccaa 380

                                                                       
Query: 181 cttcatatgctgcaaataaactatcataaattgataacagatatttcatgagcttatagc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 381 cttcatatgctgcaaataaactatcataaattgataacagatatttcatgagtttatagt 440

                                                                       
Query: 241 ctgcatataataatatgcgccagtatttgtcatatattacatgtcctgatgcggttcaaa 300
           ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 441 ctgcatagaataatatgcgccagtatttgtcatatattacatgccctgatggggttcaaa 500

                                                                      
Query: 301 agaattattggtcataagttttcccagcgaaggaactgacaatgtacacaattaagtaa 359
           ||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||
Sbjct: 501 agaattattggtcataagttttcccagtgaaggaactgagaatgtaaacaattaagtaa 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)