BAC Information

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BAC

Clone NameMSMg01-099I16
Chromosome4 (Build37)
Map Location 144,494,752 - 144,495,256
singlet/doubletsinglet
Overlap geneDhrs3
Upstream geneLOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844
Downstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099I16.T7 (MSMg01no099_i16.b1)MSMg01-099I16.TJ (MSMg01no099_i16.g1)
ACCAG315454AG315455
length726711
length of high quality
(start - end)
278 (44 - 321)505 (77 - 581)
definitionCHROMAT_FILE: MSMg01no099_i16.b1 PHD_FILE: MSMg01no099_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:04 2005CHROMAT_FILE: MSMg01no099_i16.g1 PHD_FILE: MSMg01no099_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTGTATGCCCGCTTTTGTTGTGCAAACTTTGTTTCTGAATTTAAA
ACTATTCATTGAATAAAGTTGTCTACCACCTGTAGCAGGGCAGAAAAGAG
ATAGGAGGGGCTTCAGTTCCTGGGTTAAGGTCAGAGGCAAAGATCACAGA
GAGAGGAGAAGAGGAAGGAGAAAGGTATTATGAGGGAGGTAGGTGGTGAG
CGTCTGGCCTTGAGAACTGGCCTGTTGGAGTAGGAGTGGCCTAGGTAGAA
CAGGACAAATGATATCTCAGGTTTTCTGATAAGCAAGTAGACAAACTAGC
AAAGAGGGCTGATAAGTTTTGCCTGCTTTATTTGGCAACTAATTGGCCTA
ATGTGGCGTAGAAACTCCCAAATAATATTTACCACAACAGAGGAACTCTA
GCCTGTTACAACATGGACAATATAATGCTTCTCATAAACACAATTCTGTA
TAAATGCCTACTGATGCTGGAGACCCCTATCTTTTTGATTCCTCCACTTT
GCTATTGCGCTCTTTTTCATGATTCCGCTGTTATCCCTCCCTCCTATGTT
CCCCGCTCTCCCGCGTTTTGTTTTTTCCGACCCTTCCCCTCCTCCCTTTT
CCCGCCGTTTTTTCTGCTTCCCCTTTTCTTTATCTCACCTACCCCTTTTT
TTCTGACTTGCCCCTTCTTTTTTTCG
CGATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGCATTCTGGGTAATTGGGTATC
TGGTGAGCATGTGAGTGATGAATGACATCATGTTGCCATTTTTGTCAGCA
ATGATAATGCTACTGATTACCATTAGGACCAGCCACAGGATGACAAGGCC
TCTCGCTGCTCAAGCAACCATAAAAAAACGTAATCACAGAGACCTTAAAG
AGGGAAACCAAGTGGAGGATATAGTGCGGTCGTCTGGTTACAACAGCACT
AACATCAGCAACACTCAACACTACTGTTAAGCCATGAGCCTTCTTCTGCC
TGTCCTGGGTGGCAGGCAACATAGATCTGCCATTCAAAACCTACGATGTG
CTAGGGAGAGGGCTCAAAGAATACGAGCACATATACACATAAAATACTTT
TTAAAGATTTATTTATTTTTCTTTTATGTTTTATATATGAAATATTTGCT
TGCATATAGGTGCACGTGCAGAATATATACCATGTGCATGTCCTGTGCCA
GAAGAGCCTAGAAGAGGGCATCTGATCTCCTGGAACTGGCAACAGACACT
TGCGAGACATCATGCGTTTGCTACGAACTGAACCTGGTTCCTCTGCAAGA
GCAACAAGCATTTTTAACCACTGAGCCCTCCCTCTTATTCTTTCCAAGAA
ATTATTGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_i16.g1 MSMg01no099_i16.g1 CHROMAT_FILE:
MSMg01no099_i16.g1 PHD_FILE: MSMg01no099_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:05 2005
         (505 letters)



>mm_chr4_144494672_144495576
          Length = 905

 Score =  953 bits (493), Expect = 0.0
 Identities = 502/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcattctgggtaattgggtatctggtgagcatgtgagtgatgaatgacatcatgttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aggcattctgggtaattgggtatctggtgagcatgtgagtgatgaatgacatcatgttgc 526

                                                                       
Query: 61  catttttgtcagcaatgataatgctactgattaccattaggaccagccacaggatgacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 catttttgtcagcaatgataatgctactgattaccattaggaccagccacaggatgacaa 466

                                                                       
Query: 121 ggcctctcgctgctcaagcaaccataaaaaaacgtaatcacagagaccttaaagagggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggcctctcgctgctcaagcaaccataaaaaaacgtaatcacagagaccttaaagagggaa 406

                                                                       
Query: 181 accaagtggaggatatagtgcggtcgtctggttacaacagcactaacatcagcaacactc 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 accaagtggaggacatagtgcggtcgtctggttacaacagcactaacatcagcaacactc 346

                                                                       
Query: 241 aacactactgttaagccatgagccttcttctgcctgtcctgggtggcaggcaacatagat 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aacactactgggaagccatgagccttcttctgcctgtcctgggtggcaggcaacatagat 286

                                                                       
Query: 301 ctgccattcaaaacctacgatgtgctagggagagggctcaaagaatacgagcacatatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctgccattcaaaacctacgatgtgctagggagagggctcaaagaatacgagcacatatac 226

                                                                       
Query: 361 acataaaatactttttaaagatttatttatttttcttttatgttttatatatgaaatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 acataaaatactttttaaagatttatttatttttcttttatgttttatatatgaaatatt 166

                                                                       
Query: 421 tgcttgcatataggtgcacgtgcagaatatataccatgtgcatgtcctgtgccagaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tgcttgcatataggtgcacgtgcagaatatataccatgtgcatgtcctgtgccagaagag 106

                                    
Query: 481 cctagaagagggcatctgatctcct 505
           |||||||||||||||||||||||||
Sbjct: 105 cctagaagagggcatctgatctcct 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)