BAC Information

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BAC

Clone NameMSMg01-100G13
Chromosome4 (Build37)
Map Location 15,335,893 - 15,336,281
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
Downstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100G13.T7 (MSMg01no100_g13.b1)MSMg01-100G13.TJ (MSMg01no100_g13.g1)
ACCAG316118AG316119
length712692
length of high quality
(start - end)
74 (97 - 170)496 (55 - 550)
definitionCHROMAT_FILE: MSMg01no100_g13.b1 PHD_FILE: MSMg01no100_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:15 2005CHROMAT_FILE: MSMg01no100_g13.g1 PHD_FILE: MSMg01no100_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATCGAGAGAGGATCCGCGGAATTCTGGTTC
TCTTTAACAGGTATAAATGTGAGAGCCCTGACGGGTCTGTGGCCATTTCT
GTTCATGCTGGTCATCCCTGCTACTTCTAGATCTTCTGTTGCATTTGCTG
CTTTTGCTATTGCTGGATTGCTGGATTGCTGCATTGCTGGATTGCTGCAT
TGCTGGATTGCTGGATTGCTGGATTGCTGGATTGCTGTGCTGCTATTTGC
TTGTTGCTATTGCTTGAAGATATCCTTCCCATGAAGATTGCACATGCCCC
TAGCATCTATACACCCCCAATCCGCAGCAAGTAGACTAACGATATCTATT
ACTCTCTCTCCCCTCTAACCTTCTTTCTCAGCTTCCCAGAGTAATATCAC
ACCCGATTTGAATAGATACATGGATGGTAGAGTACCCATTATCCTATTTC
TGTTTGATAAAACTCCTATCGCTACCCTTATCCTACCTTACAATTTTTAA
TATAAATGTTTTTTTCATATCTATTTGCACCTCTCCCTCCTTCTTCCCTT
CTTTTATTCCCCCACCGCACACTATTTCGCCCCTCTATCCGGCCCCTCCC
CCTCCTTCCCTTCCCTTCCCTTGCTCCATTTCCCCTCCTATCTTCCCCTC
TTTTCTCTCTTCTTTTCCCCTCCTTTCCTTTTCCTTTTCTCTCTTCTTCC
TCTCCCTCTCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGAGAGATAACACTGGAGAAACTGAAAAAAAAAAGAAATATGGGAA
TATTTGTGTTAATGAGGGGAAAGAAAGGGATCCTGAAAATAAGTCAGGAA
GAAAGAAACAATTCATACTTTGGTTTACCCTAGAGGCTAGGATACTATAG
ATTTATGTAGTATAAGTATCTTATAGATAAGATTATTATAATACATGAGG
ACCAGGGTGTTACAAACTCTGTCCTCTAGCTATGACATGGCTATTACTGT
CTTAAAATCAGCGCAGATATGATTAATGATTACCCACAAAAGATAGCCAT
AAGATTGAGCTTATTGCCCTTCCACCCACTCCTTTCTGCTGGGACAGACT
CCTAGTTGGTCTGCTCCCTTGAAGACATCATATCCCAATCCATTCCTAGA
GGACCTGCTGCACTCAGAGCAGTTGAGCAGTTGAGAACCCTCTGCACTCA
AAACAGTTGAGGATCAGCTGCTCTCAGGGCAGTTGGACAATTGCTTGATT
GCTCCCCTGAAGACCCAACAATCTCAAGGTCTCCCAGGAGATCTACTGCA
GGCAGGTCAACAGAGCAACAGTTTCTCTGCCCCTGCAAAGAGCCCCCAGT
TGGAAAGCCCCATAGGTGGTCTGATACAGCCCGGACCTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_g13.g1 MSMg01no100_g13.g1 CHROMAT_FILE:
MSMg01no100_g13.g1 PHD_FILE: MSMg01no100_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:15 2005
         (496 letters)



>mm_chr4_15335893_15336787
          Length = 895

 Score =  733 bits (379), Expect = 0.0
 Identities = 388/391 (99%), Gaps = 2/391 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagagataacactggagaaactgaaaaaaaaaagaaatatgggaatatttgtgttaatg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 389 tgagagataacactggagaaactg-aaaaaaaaagaaatatgggaatatttgtgttaatg 331

                                                                       
Query: 61  aggggaaagaaagggatcctgaaaataagtcaggaagaaagaaacaattcatactttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aggggaaagaaagggatcctgaaaataagtcaggaagaaagaaacaattcatactttggt 271

                                                                       
Query: 121 ttaccctagaggctaggatactatagatttatgtagtataagtatcttatagataagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttaccctagaggctaggatactatagatttatgtagtataagtatcttatagataagatt 211

                                                                       
Query: 181 attataatacatgaggaccagggtgttacaaactctgtcctctagctatgacatggctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 attataatacatgaggaccagggtgttacaaactctgtcctctagctatgacatggctat 151

                                                                       
Query: 241 tactgtcttaaaatcagcgcagatatgattaatgattacccacaaaagatagccataaga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 150 tactgtcttaaaatcagcgcagatatgattaatgattacccacaaaagatagtcataaga 91

                                                                       
Query: 301 ttgagcttattgcccttccacccactcctttctgctgggacagactcctagttggtctgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 90  ttgagcttattgcccttccacccactcctttctgctgggacagactcctagtt-gtctgc 32

                                          
Query: 361 tcccttgaagacatcatatcccaatccattc 391
           |||||||||||||||||||||||||||||||
Sbjct: 31  tcccttgaagacatcatatcccaatccattc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space:   430110
Effective search space used:   430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)