BAC Information

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BAC

Clone NameMSMg01-101F16
Chromosome4 (Build37)
Map Location 70,612,772 - 70,613,311
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC242497, LOC671064, Cdk5rap2, Megf9
Downstream geneLOC100039565, LOC100039979, LOC667638, EG667649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101F16.T7 (MSMg01no101_f16.b1)MSMg01-101F16.TJ (MSMg01no101_f16.g1)
ACCAG316789AG316790
length738740
length of high quality
(start - end)
561 (72 - 632)229 (73 - 301)
definitionCHROMAT_FILE: MSMg01no101_f16.b1 PHD_FILE: MSMg01no101_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:32 2005CHROMAT_FILE: MSMg01no101_f16.g1 PHD_FILE: MSMg01no101_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCGGAATT
CATCATAGTTTACAGACATGGTCACAGGAACTTGCCATGATGGTAGAAAA
TTAAGAGTTTGCATGTACTGACCAGAGAGCAAACTGGAAATGGTCAACCT
ACATACCTTCAAAACTGGCCCCTTGGTGATCTACTTAGTTTCTGTTTTCT
AAAAGTTCCATAAACTACCTAAAAAGTACCACTGATAAGAGATCATGTGT
TCAAAAATATGAACCTGTGGGAGTAATTTCTCATTCAAATCATCATACCT
AGTGACTTACCTGATCCAGTCTTGTTGCCTGAAATGTCAAATATTTCCTA
TGGCTCTCCATAGATCCTAAAGGTTCATAAATTGTGCATTTAATCCTTCA
GTGGTACATAATGGGACCTTGAAATAAGACACATTTTAGATAAATTAGTG
AACTATCTCTTGCTTGAGTGAGTTTATATGGAATAATATGAGTAAGAAGA
AGTGTTGGCAATTGTAAGAGAGGCTGTCTCTCAGCCTCTGTCTCTTCTAT
ACATATTTGCTTTCTCTTCCCCTTTGCCATTGGTTAGAGCCACACAGAGC
CATTACAAAAAGTCAATCAGGTATCAATTTCACAGTCTTGAAATATATAG
CCTCTAGAATAGAGAACCAGCCTAAGTCTTGATTGTTATGAGAAGTACCA
TCAAGTACTCTGTTCCAGGACAGAACAAAAACTCAGGT
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCTGGAATTCAAGAGTGGGGAGGCAGGAGTTGGTGTGTGG
GTGGGGGAACACCCTCATAGAAATAGGGGCAGGGGAGATGGGATAGGGGG
TTTCCTGCAGGCAACAGGGAAAGGGGATAACTATTGAAGTGTAAATAAAG
AAAATATCCAATGTAAAAAAAGAAAAAAGAAAAAATATAGCTTTCCCCCC
CATGTTTTTTTAAGTATAAGAAAATGAAAATGACTTTCAGCTTATTGTCA
CTTAGAAATAATTATTTTTGTATATTTAAAGTTGGAGAAACAGCAAGCAA
ACTTATATCTATATATTTGATGCACCGACATAAAATATGCATATTTATAA
CAGGCTTATTAACTCTTATCAATGTAATTGGCTTGTCCAATGATTCAAAG
CATGTATGATCCTTAGAAACTTGTCCCTATGGATGGGTTCTCATGCACTC
ACTAACAGAATCTTATTTGTGGGTCATCTGACAGCTCCAACCTACATTTT
AAGGCTTCTATGCTGATGTCCAGCTACGAAAAACAGAATGGATTTTCGCT
AGACTCCATTCTACTTTTCTTAACAAGTCACAATTTGTCTTGCGAAGTCA
AAAATTCTTTAATTGTTTAATCACCTTGCCTTTTTATGATTGGAATAAAT
AATCCCTGAACCTTGACTTTCAAACGTCCCCAATTTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_f16.b1 MSMg01no101_f16.b1 CHROMAT_FILE:
MSMg01no101_f16.b1 PHD_FILE: MSMg01no101_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:32 2005
         (561 letters)



>mm_chr4_70612351_70613311
          Length = 961

 Score =  982 bits (508), Expect = 0.0
 Identities = 532/540 (98%)
 Strand = Plus / Minus

                                                                       
Query: 22  gtagaaaattaagagtttgcatgtactgaccagagagcaaactggaaatggtcaacctac 81
           ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 961 gtagaaaattaagagtttgcatgtactgagcagagagcaagctggaaatggtcaacctac 902

                                                                       
Query: 82  ataccttcaaaactggccccttggtgatctacttagtttctgttttctaaaagttccata 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ataccttcaaaactggccccttggtgatctacttagtttctgttttctaaaagttccata 842

                                                                       
Query: 142 aactacctaaaaagtaccactgataagagatcatgtgttcaaaaatatgaacctgtggga 201
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 841 aactacctaaaaagtaccactgataagagatcatgtgttcaaaaatatgaacctgtggta 782

                                                                       
Query: 202 gtaatttctcattcaaatcatcatacctagtgacttacctgatccagtcttgttgcctga 261
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||
Sbjct: 781 gtaatttctcattcaaatcatcatacctagtgacttaccagatccagtcttgcaacctga 722

                                                                       
Query: 262 aatgtcaaatatttcctatggctctccatagatcctaaaggttcataaattgtgcattta 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aatgtcaaatatttcctatggctctccatagatcctaaaggttcataaattgtgcattta 662

                                                                       
Query: 322 atccttcagtggtacataatgggaccttgaaataagacacattttagataaattagtgaa 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atccttcagtggtacataatgggaccttgaaataagacacattttagataaattagtgaa 602

                                                                       
Query: 382 ctatctcttgcttgagtgagtttatatggaataatatgagtaagaagaagtgttggcaat 441
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 601 ctatctcttgcttgagtgagtttatatggaataatatgagtaagaagaagagttggcaat 542

                                                                       
Query: 442 tgtaagagaggctgtctctcagcctctgtctcttctatacatatttgctttctcttcccc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgtaagagaggctgtctctcagcctctgtctcttctatacatatttgctttctcttcccc 482

                                                                       
Query: 502 tttgccattggttagagccacacagagccattacaaaaagtcaatcaggtatcaatttca 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttgccattggttagagccacacagagccattacaaaaagtcaatcaggtatcaatttca 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)