BAC Information

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BAC

Clone NameMSMg01-101K12
Chromosome4 (Build37)
Map Location 76,685,300 - 76,685,547
singlet/doubletsinglet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101K12.T7 (MSMg01no101_k12.b1)MSMg01-101K12.TJ (MSMg01no101_k12.g1)
ACCAG317011AG317012
length788792
length of high quality
(start - end)
401 (101 - 501)248 (127 - 374)
definitionCHROMAT_FILE: MSMg01no101_k12.b1 PHD_FILE: MSMg01no101_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:57 2005CHROMAT_FILE: MSMg01no101_k12.g1 PHD_FILE: MSMg01no101_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTATGTTTTTTNTNTTNNTTTCNTTTTTCTTTCTTTTCCNCTCTATTA
TNNNGGCTCTATAAXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGAAC
CGCGGAATTCTTCCCCTCTCCCCCCTTCCCTTCAACTAGGAGAGGGCAAC
CCCCCTGTTTTCACCCCCTTTGCATGAAGTCTCTAAAAGTTTAGGAACAT
TCTCTCCCATTGAGGCTAGACAAGGCAGTCCTCTGCTATACAAGTGCGCC
AGTGGTCTTGGTCTAGTCCATGTATTCTCTTTGCTTGGTAACTCAGTCTC
TGGGAGCTCCCATAGGTTCAGTTTAGTTGGTACTGTTGGGCTTCCTATGG
GGTTATCATCCATCAATTCCTCCCCTAATTCTTTCATAGGGATCCCTGGC
CTCTATCCAATGCTTGGCTGTATCTGCATCTATCTCTGTCAGATGCTGGT
AAAGCCTCTCAAGGGACACCCATGCTAGGCTCCGGTCTGCTAGCACAACA
TTAGTATCACTAATACTGTCAGGTATTGGTGCCCTCCCATGGGATGGGTC
CCAAGTTCGGCCTGTCACCGCCATACCTATTGTCTCTCCCTTACATTTGC
TTCTGCATTTCTTTTACACAGGAACAATTTTGAATTGAAAGCTTTGTAAG
AGCGTTAGTGTCCCCATACCTCTATTGGTAGCCCTGTTTTGATGCCACTG
GTGATTTCTAAAATTTTCTTAATCCCCCCTGTTTGAAATTTTGAAAAAAG
ATACTCATATTGGCCCTGGTAGACTTCCTCATCCAAAG
NNNNNNNNNNNNNNNNTTTTTTCCTCTTCTTCTTNTNCNCCACAAATTTT
TTNACCATGATATGGGAGGCCTGGCGGCCGCCTGGTTTCATACCAGGGGT
GACCTATAGAAGGTTCCGGAAAAATCTTTTTCTCCACCAGATTAAAAGCA
AACAATAAAAATAAAACAGAGCAGCTACCACCGGGAAACAATATAATTCA
CCAATTTGGGATTAAACATTGTTGTTATAACTTGAGGTTCGCTGATGTGC
ACAAGGCCAGCAATTCAATTTCTTCTTAATAATATGAGATTATTTCAAAG
ATTAACAACAGAGTATCTGATGATTAAGACAGTTTTCCTGGGACTAGTGA
GATGTTTCAATGGGTAAAATTGTTGTTTTTCAAAGAAAAGAAACTGTGTT
TGAACCCAAAGCATCTGTATAACCGGCAACTATGATGTCACACACCTGCA
ACCATGGCACTGCGGAAGAAGCATCAGGAGGATTCTCCGGGCTTGCTTTG
GCTAGCCAAATCATGAAGCTCCAGGTTTAGGAAAATACCTTGTCTGAGCA
GGAAAAGTGGATCATAACAAAAGATGAATTGACCTTGACCCATGGTCTCT
TCATGCAAGAACACTCACATACACATGCCTGTGTACCCATGCTTACAACA
TACACACACATTCATTTATTTTTATCCTGTTTGTGATATTTCTTAATGAG
ACAAACATAAATATTATACTTTTATTATCTTAATATTCCCCACTCCACAA
ATACTTACTTTTAGACTATAGTGAGCAGACGCACGCCAGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_k12.g1 MSMg01no101_k12.g1 CHROMAT_FILE:
MSMg01no101_k12.g1 PHD_FILE: MSMg01no101_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:57 2005
         (248 letters)



>mm_chr4_76685100_76685747
          Length = 648

 Score =  456 bits (236), Expect = e-133
 Identities = 245/248 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttctccaccagattaaaagcaaacaataaaaataaaacagagcagctaccaccggga 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tttttctccaccagattaaaagcaaacaataaaaacaaaacagagcagctaccaccggga 260

                                                                       
Query: 61  aacaatataattcaccaatttgggattaaacattgttgttataacttgaggttcgctgat 120
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 261 aacaatataattcaccaatttgggattaaacgttgttgttataacttgaggttcactgat 320

                                                                       
Query: 121 gtgcacaaggccagcaattcaatttcttcttaataatatgagattatttcaaagattaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcacaaggccagcaattcaatttcttcttaataatatgagattatttcaaagattaac 380

                                                                       
Query: 181 aacagagtatctgatgattaagacagttttcctgggactagtgagatgtttcaatgggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagagtatctgatgattaagacagttttcctgggactagtgagatgtttcaatgggta 440

                   
Query: 241 aaattgtt 248
           ||||||||
Sbjct: 441 aaattgtt 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)