BAC Information

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BAC

Clone NameMSMg01-101P04
Chromosome4 (Build37)
Map Location 129,711,871 - 129,875,725
singlet/doubletdoublet
Overlap geneCol16a1, Pef1, Hcrtr1, Tinagl
Upstream geneIbrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2
Downstream geneGm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101P04.T7 (MSMg01no101_p04.b1)MSMg01-101P04.TJ (MSMg01no101_p04.g1)
ACCAG317226AG317227
length709710
length of high quality
(start - end)		622 (70 - 691)294 (78 - 371)
definitionCHROMAT_FILE: MSMg01no101_p04.b1 PHD_FILE: MSMg01no101_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:22 2005CHROMAT_FILE: MSMg01no101_p04.g1 PHD_FILE: MSMg01no101_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,711,871 - 129,712,492)(129,875,435 - 129,875,725)
sequence
CCCATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAACAGAGGCGC
GGAATTCACAACATTACAAAAATAAAACCCACAAACATTTTTCGAACGCT
TATTATGAGCCAGACCCCACGCTGGACCCCGAGGCAGTGATTCTGGAGGA
AACCCACGCTCTCAGCTCTGTATCCGAGACGCACACAGGCAGGTGCAGCA
GGTAGGGATCTTGGCCCAAGAAAGACCCTGTGTCTGTATTGCCTGAAGAC
CTCCTCCAATCTGATCCACTCTACGCTCTTTGCTGTGAGAAAATTTGCAG
AAAATTCCATCTCACCCATTCCTGTACTCACTCTTTCTTCCTCTATGCAA
AGATCCAGTGCTCCTTCCTACACCATAGAAGAGCTGCCTCCCGTCCTGGT
CCACCTTACCCCCGGAGAGAGGCCTGCTGTGCTGGGCCCCGTGGGAGTCT
TTTTTCTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCAG
AAAGTCCCCTATACCCTCCTATCACCCTGCTCCCCTACCCACCCACTCTC
ACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAACGTTTGCAAG
ACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTATGCCATCTTCTGCTA
CATATGCAGCTAGAGACACGAGCTCTGGGGGTACTGGTTAGTTCATATTG
TTGTTCCAT

CCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAGTGCCCGAGAAGGTGACGC
ACAGATGGAATCAGAGGATACAGACGACAGCTCATAGGCTGGGGAGGAGG
CTGGCCCAGAAGCACTGACCAGAGAGGCTGACAGGTCTGGGCTGACCTAG
GAGGTCAAAGAGGAGACGTGGAACTCATTAGCCTCCTGCCTCAGTCTCCT
GACTGTTGGGGTTACCGGCATATACACGGCATCCACACAGCAAAAGGAGC
TTTGTAAAAAGAGGGAAATACCTCATATTCTTATACAACTTCCCCCAAAG
TTAGACGCTATTGTTGTCATCAAACATCTTACTTGCTTAAAGCTGATCTT
CATTCAGACCCACTGAATCATCTCTGGGAGGTGAGACCAGGAGTCTGCGT
GTTTAATAAGCAGTCTGGAAGGTTCTCCTTAAAACAAAATCCAAGGACTG
GACAGGTGTCTCGTTCGTTAAAACCCCATGTTGCTCTTGCAGGGGACCTG
ATTTCCCATCCTATATTCCATATTATGTGACTTACAAGTCCCCCTATAAT
TTCTACTCCCGGAACATCCTATTCTGACCTCTGCTGGGATTCCTATGCTC
GGTGTTATCACCTCCTCCCTCATCTCAACTCCCAATTCATACACAAACAC
CCCCGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_p04.b1 MSMg01no101_p04.b1 CHROMAT_FILE:
MSMg01no101_p04.b1 PHD_FILE: MSMg01no101_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:22 2005
         (622 letters)



>mm_chr4_129711671_129712692
          Length = 1022

 Score = 1195 bits (618), Expect = 0.0
 Identities = 621/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataaaacccacaaacatttttcgaacgcttattatgagccagaccccacgctggaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaataaaacccacaaacatttttcgaacgcttattatgagccagaccccacgctggaccc 260

                                                                       
Query: 61  cgaggcagtgattctggaggaaacccacgctctcagctctgtatccgagacgcacacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgaggcagtgattctggaggaaacccacgctctcagctctgtatccgagacgcacacagg 320

                                                                       
Query: 121 caggtgcagcaggtagggatcttggcccaagaaagaccctgtgtctgtattgcctgaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggtgcagcaggtagggatcttggcccaagaaagaccctgtgtctgtattgcctgaaga 380

                                                                       
Query: 181 cctcctccaatctgatccactctacgctctttgctgtgagaaaatttgcagaaaattcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcctccaatctgatccactctacgctctttgctgtgagaaaatttgcagaaaattcca 440

                                                                       
Query: 241 tctcacccattcctgtactcactctttcttcctctatgcaaagatccagtgctccttcct 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcacccattcctggactcactctttcttcctctatgcaaagatccagtgctccttcct 500

                                                                       
Query: 301 acaccatagaagagctgcctcccgtcctggtccaccttacccccggagagaggcctgctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaccatagaagagctgcctcccgtcctggtccaccttacccccggagagaggcctgctg 560

                                                                       
Query: 361 tgctgggccccgtgggagtcttttttcttttattagatattttcttcatttacatttcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctgggccccgtgggagtcttttttcttttattagatattttcttcatttacatttcaa 620

                                                                       
Query: 421 atgctatccagaaagtcccctataccctcctatcaccctgctcccctacccacccactct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgctatccagaaagtcccctataccctcctatcaccctgctcccctacccacccactct 680

                                                                       
Query: 481 cacttcttggccctggcattcccctgtactggggcatataacgtttgcaagaccaagggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacttcttggccctggcattcccctgtactggggcatataacgtttgcaagaccaagggg 740

                                                                       
Query: 541 cctctcttcccaatgatggccgactatgccatcttctgctacatatgcagctagagacac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctctcttcccaatgatggccgactatgccatcttctgctacatatgcagctagagacac 800

                                 
Query: 601 gagctctgggggtactggttag 622
           ||||||||||||||||||||||
Sbjct: 801 gagctctgggggtactggttag 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no101_p04.g1 MSMg01no101_p04.g1 CHROMAT_FILE:
MSMg01no101_p04.g1 PHD_FILE: MSMg01no101_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:22 2005
         (294 letters)



>mm_chr4_129875383_129876076
          Length = 694

 Score =  516 bits (267), Expect = e-151
 Identities = 285/291 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggagtgcccgagaaggtgacgcacagatggaatcagaggatacagacgacagctcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 343 gggagtgcccgagaaggtgacgcacagatggaatcagaggatacagaagacagctcatag 284

                                                                       
Query: 61  gctggggaggaggctggcccagaagcactgaccagagaggctgacaggtctgggctgacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gctggggaggaggctggcccagaagcactgaccagagaggctgacaggtctgggctgacc 224

                                                                       
Query: 121 taggaggtcaaagaggagacgtggaactcattagcctcctgcctcagtctcctgactgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 taggaggtcaaagaggagacgtggaactcattagcctcctgcctcagtctcctgactgtt 164

                                                                       
Query: 181 ggggttaccggcatatacacggcatccacacagcaaaaggagctttgtaaaaagagggaa 240
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 163 ggggttaccggcatatacacggcatccacacagcaatgggagctttgtaaaaagagggaa 104

                                                              
Query: 241 atacctcatattcttatacaacttcccccaaagttagacgctattgttgtc 291
           |||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 103 atacctgaaattcttatataacttcccccaaagttagacgctattgttgtc 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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