BAC Information

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BAC

Clone NameMSMg01-102A18
Chromosome4 (Build37)
Map Location 98,720,702 - 98,721,102
singlet/doubletsinglet
Overlap geneDock7
Upstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Angptl3
Downstream geneLOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102A18.T7 (MSMg01no102_a18.b1)MSMg01-102A18.TJ (MSMg01no102_a18.g1)
ACCAG317299AG317300
length694686
length of high quality
(start - end)
400 (71 - 470)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no102_a18.b1 PHD_FILE: MSMg01no102_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:30 2005CHROMAT_FILE: MSMg01no102_a18.g1 PHD_FILE: MSMg01no102_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAGAGCGCGGAATTCC
AGATTATTACAGAAAGACAGGGCAGATTATGTGGAGTCTAATACACAATA
GTAAGGAAATAAATGCCTTTTCTACTTGTACTAGAAGCCACTCAAAGACG
GTCTGATTTGTACTGTGTAAAGTCTATCAGGCACAGTGTCAAGGACTGAC
CAAGACAGGAATGGAAATAAAATCACCTAGGGAGGTACAGCAAAATCAGC
AACTAAGCAACATGGAAGTGTCTAACCACATGACCAGTAAGAATTTTAAG
TATGGCTAAAATATATTTTTTATGCTGAAAACAGTGAGAGAGAAGAAAAA
AACATTATTTTTGTATTCTACGGTATTTATATTAAGTAAAATAATTAAAT
TATTACTTTCCCCTGATTATAAGTATATAGCAACTATAATTAAAACTATT
ATCTTCACCTGATTATAAGTACACAGCAATTATAAAATTATAAGTTACAA
GTGTTTCATACTATTTCTGCCTAACAGTGCTGCTCTACATGGTAACTTGT
ACTAGGTTTAAAGGGGTCCCCAGCTAAAAGCATTGGGTCAAAGGTCCATT
CTATAAGAATAATGCATATAACTTGCTGACCAAATGAGATATGAAGTCAG
AAAAGAATTCAGACCCTGCTTTCCTAGACTGAGCTTCACGGACT
ATGAAGTGAGAGGCCTGGCGGCCGCCTGGCTCCAAAATAGGGGTGACCTA
TAGAAGTTTTCGAGAAATTCTAGGGGCGGGTTAAATTCTGCCCAATTGTG
TGTGGTTGGCTGGGTTCTCGTTTTTGTTTCGTTTTTGTTTTAAGACAGAA
CTTCTAACCCTCCTGCCTCTACTTCCTGAGACTAGGACTACAGGCAGGCA
GTACCACACTCAGTCCATGTGGCCCTGGGATCAGGCCTAGGAATTTGTTC
ACACCAGGCAACACTCTTCGGGGCCACATCCAGAGCCCATCAGTAGTACT
TTAAGATTCATTTTGTTTTTGGCTCATTTTGATGGCTTGAAACAAGAATC
AGTACTACTTTTCGAGCACGTCAGCAATGTGTGCTACATGATGGATATTC
CTTCCCAGAAAACCACCAATGGCCTATAACTCCTAATCTGTATTTCAGAT
TACCCAAACACCAAAGCGCTTGGGGCGGCTCTAGCTATGTGCAAGGAATC
AGGCTCTTTCTGGATAATCTGTCGGGATCCCTTCCAGGGCAGAAATGTGA
GACATTCTTCTGATGGTGTTCTCTATAGCACGGCTGCGCGTCATGGATTT
CGGATACCAGCAGGCCTCATCCAGAATTCCTAGAGGACCTTCATTTACAG
TCTGGACATCCAGAAGCCGGAAAATGTATGCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_a18.b1 MSMg01no102_a18.b1 CHROMAT_FILE:
MSMg01no102_a18.b1 PHD_FILE: MSMg01no102_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:30 2005
         (400 letters)



>mm_chr4_98720502_98721302
          Length = 801

 Score =  716 bits (370), Expect = 0.0
 Identities = 393/406 (96%), Gaps = 11/406 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcagattatgtggagtctaatacacaatagtaaggaaataaatgccttttctacttgta 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ggcagattatgtggagtctaatacacaatagtaaggaaataaatgcattttctacttgta 260

                                                                       
Query: 61  ctagaagccactcaaagacggtctgatttgtactgtgtaaagtctatcaggcacagtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagaagccactcaaagacggtctgatttgtactgtgtaaagtctatcaggcacagtgtc 320

                                                                       
Query: 121 aaggactgaccaagacaggaatggaaataaaa-tcacctagggaggtacagcaaaatcag 179
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 321 aaggactgaccaagacaggaatggaaaaaaaaatcacctagggaggtacagcaaaatcag 380

                                                                       
Query: 180 caactaagcaacatggaagtgtctaaccacatgaccagtaagaattttaagtatggctaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactaagcaacatggaagtgtctaaccacatgaccagtaagaattttaagtatggctaa 440

                                                                       
Query: 240 aatatatttttta-----tgctgaaaacagtgagagagaagaaaaaaacattatttttgt 294
           |||||||     |     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatatat-----acaagatgctgaaaacagtgagagagaagaaaaaaacattatttttgt 495

                                                                       
Query: 295 attctacggtatttatattaagtaaaataattaaattattactttcccctgattataagt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 attctacggtatttatattaagtaaaataattaaattattactttcccctgattataagt 555

                                                         
Query: 355 atatagcaactataattaaaactattatcttcacctgattataagt 400
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atatagcaactataattaaaactattatcttcacctgattataagt 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 801
Length adjustment: 9
Effective length of query: 391
Effective length of database: 792
Effective search space:   309672
Effective search space used:   309672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)