BAC Information

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BAC

Clone NameMSMg01-102D19
Chromosome4 (Build37)
Map Location 68,095,190 - 68,095,590
singlet/doubletsinglet
Overlap genenone
Upstream geneHmgb1-rs18, LOC433715, Tcp1-ps1
Downstream geneDbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102D19.T7 (MSMg01no102_d19.b1)MSMg01-102D19.TJ (MSMg01no102_d19.g1)
ACCAG317439AG317440
length710689
length of high quality
(start - end)
401 (43 - 443)242 (49 - 290)
definitionCHROMAT_FILE: MSMg01no102_d19.b1 PHD_FILE: MSMg01no102_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:46 2005CHROMAT_FILE: MSMg01no102_d19.g1 PHD_FILE: MSMg01no102_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATGGCGCGGAATTC
TTTTATACTCTCTCCTCAAAATGTCTGGCATGCTCAATCTGGCATGTTCA
ATCCCAGCAGTTTGTATTTCATCAATCTCATATGTTTTATCTTATTATAA
ATCTTATATGATTTATCTTCCTGCTTTACTGTCTTTTTGTTGTCTCCCTC
CCTGTCTCCGAAAAACCTCTTCCATACTAAAATACTGTTTGCAAGTGTCT
CTTCTACCATGATGTTTTCTTTCATTTTCCACTTAACATCTATTCCGTTA
AGAAGATTTTCTTTACTGTATTCAGACAATATTTATTTTATTATTACAAG
ACAGGCACTAATTACAATTTATGGAAGACTAATCTCCTTAGATATAGAAT
TTTAGATTAGGTTACTTTGTATAGAGTGAATAATGTAATCAAGAGGGGAA
GATGGCTCTATGTTTGAATCCTCATGTTATATATTACTAAAGATATTTGT
TTGAATAGTAACACTACCATTCTAAAGCAGTTTTGTTTTTGCTTGACAAC
TGGGATATTAAAAATCCCTTTGCAAATGAGCATGAAAAATTTTCCAATAT
AAGGATACAGATAGACTTTATCAAAATCTTTCTTCTATAATGTAAGTCAT
TCACCACTGTTTACTATTACCATCTGCTTGCATTTGCTTTCGCTTAAATT
CAAAAAACCC
GGCGGCCGCCTGTCCAAAAATGGAGGTGACCTATAGAATTTCCAGCGGAA
TTCTCACCTGAGGAATACCGAATTGCAGAAAAGCAACCGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
AACTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATCGTTGGTGGGA
TTGCAAGCTTGTACAACCACTTTGGAAATCAGTCTGGCGGTTCTTCTGAT
TATTGGGCATAGNACTACTGGAGGATCCAGCAATACCTCTTCTGGGCATA
TATCCCGAAGATGTCCCAACCGGTATGAAGGACACGTGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAACGAACCCAGATTCC
TCTCAACAGAGGAATGGAGACAGAAAATGTGGTACATTTATACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATG
CATGGACCTGCAGGGCATCATGCTGAATGAGGTAACCCAATCACAAGGGA
ACTCACACAATATGTACTCACTGATAATTGGATATTATCCCTAAACTTAC
GATACCTATGTTATAAGATTACATTTTTCCAAATGCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_d19.b1 MSMg01no102_d19.b1 CHROMAT_FILE:
MSMg01no102_d19.b1 PHD_FILE: MSMg01no102_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:46 2005
         (401 letters)



>mm_chr4_68094988_68095790
          Length = 803

 Score =  671 bits (347), Expect = 0.0
 Identities = 387/401 (96%), Gaps = 2/401 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcttttatactctctcctcaaaatgtctggcatgctcaatctggcatgttcaatcc 62
           ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 gaattcttttatactatatcctcaaaatgtctggcatgctcaatctggcattttcaatcc 262

                                                                       
Query: 63  cagcagtttgtatttcatcaatctcatatgttttatcttattataaatcttatatgattt 122
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 cagcagtttgtatttcatcaatctcatatgttttatcttattataagtcttatatgattt 322

                                                                       
Query: 123 atcttcctgctttactgtctttttgttgtctccctccc--tgtctccgaaaaacctcttc 180
           |||||||||||||| |||||||||||||||||||||||  |||||||||||||||| |||
Sbjct: 323 atcttcctgctttaatgtctttttgttgtctccctccctgtgtctccgaaaaaccttttc 382

                                                                       
Query: 181 catactaaaatactgtttgcaagtgtctcttctaccatgatgttttctttcattttccac 240
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 383 catactaaaatactgtttgcaagtgtctcttctaccatgatgctttctctcattttccac 442

                                                                       
Query: 241 ttaacatctattccgttaagaagattttctttactgtattcagacaatatttattttatt 300
           |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 443 ttaacatctattccattaagaagattttctttacagtagtcagacaatatttattttatt 502

                                                                       
Query: 301 attacaagacaggcactaattacaatttatggaagactaatctccttagatatagaattt 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 503 attacaagacaggcactaattagaatttatggaagactaatctccttagatatagaattt 562

                                                    
Query: 361 tagattaggttactttgtatagagtgaataatgtaatcaag 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagattaggttactttgtatagagtgaataatgtaatcaag 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 803
Length adjustment: 9
Effective length of query: 392
Effective length of database: 794
Effective search space:   311248
Effective search space used:   311248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)