Query= MSMg01no102_g05.b1 MSMg01no102_g05.b1 CHROMAT_FILE:
MSMg01no102_g05.b1 PHD_FILE: MSMg01no102_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:58 2005
(249 letters)
>mm_chr4_138602462_138603110
Length = 649
Score = 443 bits (229), Expect = e-129
Identities = 244/253 (96%), Gaps = 8/253 (3%)
Strand = Plus / Plus
Query: 1 gaaggccaaagaggttcctaggtaattttctggcagtgtgagcctcccttacccc----a 56
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 gaaggccaaagaggttcctaggtaattttctggcagtgtgagcctccctta----gggga 256
Query: 57 cagcgtctgcagtcaggacccctcttcccccgttctcccaattcatcttcctccccttat 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cagcgtctgcagtcaggacccctcttcccccgttctcccaattcatcttcctccccttat 316
Query: 117 agttttttgcttcctttaccaagtgcatatgtgagtatcttttcaatggacttggtttgt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agttttttgcttcctttaccaagtgcatatgtgagtatcttttcaatggacttggtttgt 376
Query: 177 gtcagacacagctcatagcatcttctttaaggcctttcttgcagatctgcagctggtgca 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 377 gtcagacacagctcatagcatcttctttaaggcctttcttgcagatctgcagctggtgga 436
Query: 237 tgctgccccctcc 249
|||||||||||||
Sbjct: 437 tgctgccccctcc 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no102_g05.g1 MSMg01no102_g05.g1 CHROMAT_FILE:
MSMg01no102_g05.g1 PHD_FILE: MSMg01no102_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:58 2005
(270 letters)
>mm_chr4_138755995_138756664
Length = 670
Score = 485 bits (251), Expect = e-142
Identities = 266/271 (98%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 1 acaaaggtagaagaagttgtctctgatctagac-cacacacacaaacacacacaccccat 59
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 633 acaaaggtagaagaagttgtctctgatctagacacacacacacaaacacacacaccccat 574
Query: 60 cctcaacagaggctgggtgtgacggtacacacctttaatcctagtactttagaaatggag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cctcaacagaggctgggtgtgacggtacacacctttaatcctagtactttagaaatggag 514
Query: 120 gcaggaagatgagaagctcaaaggcattctatctatatagcaacctgcaccccaagccta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gcaggaagatgagaagctcaaaggcattctatctatatagcaacctgcaccccaagccta 454
Query: 180 ggtgaggtcaccaggcagctagaggtgcagacaaaaaaaaaaaaagcacacccacgttgc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggtgaggtcaccaggcagctagaggtgcagacaaaaaaaaaaaaagcacacccacgttgc 394
Query: 240 acaggtattaattctggggcggctccctgag 270
||||| | |||||||||| |||||||||||
Sbjct: 393 acagggagaaattctggggtggctccctgag 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
