BAC Information

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BAC

Clone NameMSMg01-102G07
Chromosome4 (Build37)
Map Location 84,709,988 - 84,710,296
singlet/doubletsinglet
Overlap geneD530005L17Rik
Upstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284, LOC622811
Downstream geneLOC100040303, Sh3gl2, A930009N24, LOC668052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102G07.T7 (MSMg01no102_g07.b1)MSMg01-102G07.TJ (MSMg01no102_g07.g1)
ACCAG317550AG317551
length746702
length of high quality
(start - end)
280 (61 - 340)309 (72 - 380)
definitionCHROMAT_FILE: MSMg01no102_g07.b1 PHD_FILE: MSMg01no102_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:58 2005CHROMAT_FILE: MSMg01no102_g07.g1 PHD_FILE: MSMg01no102_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATGTCACAGNGCGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TCCAGAGGATCCGCGGAATTCTATAGTGTTTCTCGCCAGTGTGCCCTCCC
AATGACAGGACGTTTTCTCCTCCTACATCCTCTTCAGCATCTCTAGTCAC
TTATTTTGGTTTTGTTTTAAATATTATCAACTCTGACAAGGGTAAAATGA
AGTATCAAAGTAGTTTTAATTTGTTGGCTAAAGCTCTTGAACAATTTTAA
AAAGTGTTTCTCAACTACTCATGTTTCTTCTGAAAACTGCTTAATTCCTT
GCTCCATTTTAGTTGAGGTGTTTGTTTCCAGATGTTAAGTATCTTGAGTT
CTTTGCATATTCTAGAGACTAACCACTGTCGTATATGTATAACTATTAAA
GGTTTTCCCATTCTGCATGCGGCCTCCTCACTTTACTGCTGGTGTCCTGT
ACTGTTCATAAGCCTTTCCGTCTGTTTCTTGATCGAATTTACCTAGTGTT
GCTCGTAATACCCGGCTATCATGTTCTTGAGCAGGACGCCCTGTGTCCGC
CCGTTCTTATCGCATTCTCCTTTTCTTATCCTATGCTTCTTTTCATTTGA
TTTTCTCTTCTCCTCTATATTTGACTTTTTTTTACGTTATTATCATTAAA
TAATCCCTCCATCCTCCCCATTATTCTTCCTTCCTCTTCCCTTCCTCTCA
CCCTGTCCATAATTTTCCTCACCTCTTTTCTACTTTCCCTACTCTC
AATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGTTTGAGCTTTTGCTACAGAAATGACC
ATGTTTATTCACAAACAAATGTACAAGAATACTCTTTGCAATTCTATTTG
TAGGAAATGTGAAGTGAAGCTTCTAAGTTCCAACAGTACAGTAGACAACA
AAGCACTATTTATCCTATTCATAAGGCGGGAAGTCAATGAACTCTGAGTG
GCAGTGAACACAAAATGCCAGGGACCAGAGGCTTTGTCTCCTACTCATAA
GTCTCCAGAGAGGAGACTTCTTCTAAACTTGAAGGGAGCAAACTGATAAT
ACAAAGGAAGTGACTCGATTTCAGTCAAGGGCTTGGTGAGGAAGTCTAAT
ATTTTCTACACACACTGGCCATCATTTCATTATGTTCTGTTAAAATCGTT
TGTAGATTTACGAAAAGGGTTTACATATGCTTGTCATATTCACTGAGAAC
TTGAGTGACTTCCCCTTACAAGTTCCTTACGCTGTATATGTATAGTGACA
ATATACAACTCAGTCTATTATGTACTATGGAGAATAATAGCTACCCCCCC
ATTGCTCCAAAAAATCTTTTCTTCATGCTACAGCCCTTCCCTATATCACT
CCATTTATGCTGTTCCTTCCACCTCTTACCCTCCCTGCCTCTTTTTACCC
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_g07.g1 MSMg01no102_g07.g1 CHROMAT_FILE:
MSMg01no102_g07.g1 PHD_FILE: MSMg01no102_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:58 2005
         (309 letters)



>mm_chr4_84709788_84710496
          Length = 709

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtttgagcttttgctacagaaatgaccatgtttattcacaaacaaatgtacaagaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atgtttgagcttttgctacagaaatgaccatgtttattcacaaacaaatgtacaagaata 450

                                                                       
Query: 61  ctctttgcaattctatttgtaggaaatgtgaagtgaagcttctaagttccaacagtacag 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 449 ctctttgcaattctatttgtaggaaatatgaagtgaagcttctaagttccaacagtacag 390

                                                                       
Query: 121 tagacaacaaagcactatttatcctattcataaggcgggaagtcaatgaactctgagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tagacaacaaagcactatttatcctattcataaggcgggaagtcaatgaactctgagtgg 330

                                                                       
Query: 181 cagtgaacacaaaatgccagggaccagaggctttgtctcctactcataagtctccagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagtgaacacaaaatgccagggaccagaggctttgtctcctactcataagtctccagaga 270

                                                                       
Query: 241 ggagacttcttctaaacttgaagggagcaaactgataatacaaaggaagtgactcgattt 300
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggagacttcatcaaaacttgaagggagcaaactgataatacaaaggaagtgactcgattt 210

                    
Query: 301 cagtcaagg 309
           |||||||||
Sbjct: 209 cagtcaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)