BAC Information

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BAC

Clone NameMSMg01-102J03
Chromosome4 (Build37)
Map Location 73,749,117 - 73,749,513
singlet/doubletsinglet
Overlap geneFrmd3
Upstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik
Downstream geneLOC100039774, Jmjd2c, LOC100040258, LOC100039814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102J03.T7 (MSMg01no102_j03.b1)MSMg01-102J03.TJ (MSMg01no102_j03.g1)
ACCAG317676AG317677
length701697
length of high quality
(start - end)
610 (68 - 677)504 (73 - 576)
definitionCHROMAT_FILE: MSMg01no102_j03.b1 PHD_FILE: MSMg01no102_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:12 2005CHROMAT_FILE: MSMg01no102_j03.g1 PHD_FILE: MSMg01no102_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTGAAAATGATATACAATATACTCAAACTTATGGAATACAATTAAAG
TGGTGCTAAGAGTAAAGTTCATAGCACTCAGTACCTACATTAAAAAAATG
TGAAGATCACATACTAGCAACCTAATAGCACACCTAAAATGCTTAGAACA
ATAAGATGTAAGCACACCCAATAGTATATGGTAAGAAGTTATCAAATTGA
GGGCTGAAATCAATAAAATAGAAACAAAGAGAACAATACAAATAATCATT
GAAACAAAGAGTTAGTTATTTGAGAAAATCAAAGATAGACAAACCTTTAT
CCAAACTAACTAAAAGACCGGAGAGAATATCCAAGTTAACAAAATCATAA
TCAAAACAAGGGACATAACAAGAGACACTGAGTAAATACAGAGAAAGATA
AGAACATACTTTAAAAACCTCTCCTTCATCCCAGCAGGTTTGTTCTAACT
GGGACACAGGTGAAACCTTTGCCCCAATATCTCCACGTGTTGGGATGCCA
CAGAGCCCAACTTGAGCTCCATCTCCCTTCTGGTCCTAACCGCCACATGT
ATTGGTGACTGGTATGCTGCTTCCCACTCCTAACTGCTCCGCCCGTCTCC
CAGGAGACCTTCTCTAACCAGGGGCAGAGGGGAGACTCCCACAGAAATAC
C
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCTGTAAAACCATCTGGACCTAAGGCT
TGTTTTGTAGCTGGACGAATTTTTAATTTCTGTTTCAATCTCCAGATTTG
TTATAGGTCTGTTTAAGTTATGTACTTCTTGGTTTCATTGTAGTGATTTG
GCTGAATTTAAAAATGTGTTCTCTTTTATTTTTTTTTCTAGCTTAATATA
ATACAGGCTTATAAGGTATTTCATGCTAGTATTCTGAGTTCTTTTTGTCT
TTTCCTATTTATTTCTGATTCTGATCATTTAGTTCCTGTCTTTTGTTCTT
TCAGTTAGCTCCTCCAAAAGTCTGTTAATCTTAAAGAGATAAATTATAGA
CTCATTGATTCTTTGTTGCTTTTTTCTATTTCACTAACTTCTACCCAATT
TTTTATTAGATATTTTCTTTATTTACCTTTCAAATGTTATCCCCTTTTCA
AGTTTCCCCTCCAAAAATCCCCTATCACCTCCCCCCTCCCCCTGCTCCCC
AACCCAACCACTCTGATTCCCAGTCCTGGCATTCAACTATACTTGGGCAT
AGAACCTTCACAGGACCTAGGGCTTCTCCTCCCATTGATGACCGACTAGG
CCATCCTCTGCTACATATACAGGTAGAACCACAACTTTCCTCCATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_j03.b1 MSMg01no102_j03.b1 CHROMAT_FILE:
MSMg01no102_j03.b1 PHD_FILE: MSMg01no102_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:12 2005
         (610 letters)



>mm_chr4_73748504_73749513
          Length = 1010

 Score =  760 bits (393), Expect = 0.0
 Identities = 396/397 (99%)
 Strand = Plus / Minus

                                                                        
Query: 210  aagagaacaatacaaataatcattgaaacaaagagttagttatttgagaaaatcaaagat 269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 aagagaacaatacaaataatcattgaaacaaagagttagttatttgagaaaatcaaagat 951

                                                                        
Query: 270  agacaaacctttatccaaactaactaaaagaccggagagaatatccaagttaacaaaatc 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  agacaaacctttatccaaactaactaaaagaccggagagaatatccaagttaacaaaatc 891

                                                                        
Query: 330  ataatcaaaacaagggacataacaagagacactgagtaaatacagagaaagataagaaca 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  ataatcaaaacaagggacataacaagagacactgagtaaatacagagaaagataagaaca 831

                                                                        
Query: 390  tactttaaaaacctctccttcatcccagcaggtttgttctaactgggacacaggtgaaac 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  tactttaaaaacctctccttcatcccagcaggtttgttctaactgggacacaggtgaaac 771

                                                                        
Query: 450  ctttgccccaatatctccacgtgttgggatgccacagagcccaacttgagctccatctcc 509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  ctttgccccaatatctccacgtgttgggatgccacagagcccaacttgagctccatctcc 711

                                                                        
Query: 510  cttctggtcctaaccgccacatgtattggtgactggtatgctgcttcccactcctaactg 569
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 710  cttctggtcctaaccgccacatgtattggtgactggcatgctgcttcccactcctaactg 651

                                                 
Query: 570  ctccgcccgtctcccaggagaccttctctaaccaggg 606
            |||||||||||||||||||||||||||||||||||||
Sbjct: 650  ctccgcccgtctcccaggagaccttctctaaccaggg 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)