Query= MSMg01no102_o16.b1 MSMg01no102_o16.b1 CHROMAT_FILE:
MSMg01no102_o16.b1 PHD_FILE: MSMg01no102_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:39 2005
(286 letters)
>mm_chr4_117357239_117357923
Length = 685
Score = 507 bits (262), Expect = e-148
Identities = 280/286 (97%), Gaps = 1/286 (0%)
Strand = Plus / Minus
Query: 1 gattgattttttcttaggcttttctataccgggaaaagcatcagctgcgagaccgcagct 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gattga-tttttcttaggcttttctataccgggaaaagcatcagctgcgagaccgcagct 427
Query: 61 tcccacttctgtgatgcgcgtgcctctttgcgccgcttatcggtgcccttctctgatgga 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 426 tcccacttctgtgatgcgcgtgcctctttgcgccgcttaccggtgcccttctctgatgga 367
Query: 121 attatcaggacacctggcaccattttgaacctgagggtggttgactccagttctgcttgt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 attatcaggacacctggcgccattttgaacctgagggtggttgactccagttctgcttgt 307
Query: 181 gttctaactccagctggagtgctcatgctattctcaccagcacttgctggcttctcacta 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 306 gttctaactccagctggagtgctcatgctgttctcaccagcacttgctggcttctcgcta 247
Query: 241 cctttcttctcatgacagctgttccttccttttctagtttgttggg 286
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccttacttctcatgacagctgttccttccttttctagtttgttggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space: 187252
Effective search space used: 187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no102_o16.g1 MSMg01no102_o16.g1 CHROMAT_FILE:
MSMg01no102_o16.g1 PHD_FILE: MSMg01no102_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:39 2005
(230 letters)
>mm_chr4_117192801_117193430
Length = 630
Score = 383 bits (198), Expect = e-111
Identities = 222/230 (96%)
Strand = Plus / Plus
Query: 1 ccacacccagcttctatgatgctttgtaataacagcccaactttggacatccattcatat 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ccacacccagcttctatgatgctttgtaataacagcccaactttggacattcattcatat 260
Query: 61 agcttgttaaaactggcctagccttatggaaagtgtgcattgctgttgttttaacttcat 120
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 agcttgttaaaactagcctagccttatggaaagtgtgtattgctgttgttttaacttcat 320
Query: 121 ttctttagttaaaagtgaacataagaaatttttcaaatgtttgctgaaaatgttaatatt 180
|||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||
Sbjct: 321 ttctttagttaaaagtgaacgtgagaaatttttcaaatgtttgttggaaatgttaatatt 380
Query: 181 aggcgtatcgtctgtgactttcctaattcctatgctttaatcatgaaggg 230
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcatatcgtctgtgactttcctaattcctatgctttaatcatgaaggg 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space: 137241
Effective search space used: 137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
