BAC Information

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BAC

Clone NameMSMg01-103B18
Chromosome4 (Build37)
Map Location 56,509,030 - 56,509,261
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103B18.T7 (MSMg01no103_b18.b1)MSMg01-103B18.TJ (MSMg01no103_b18.g1)
ACCAG318066AG318067
length759720
length of high quality
(start - end)
39 (92 - 130)232 (72 - 303)
definitionCHROMAT_FILE: MSMg01no103_b18.b1 PHD_FILE: MSMg01no103_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:55 2005CHROMAT_FILE: MSMg01no103_b18.g1 PHD_FILE: MSMg01no103_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGTACGCTCTTCTCTATAATTCXXXXXXXXXXXXXXXXXXXXXXXXXXT
CCTAAATACCGCGGAATTCTATGGGATATTCTCAGCATGGATGGCTGATG
TTTGAAGGAGTCTTTGTAGCTCTTATTTAGGAGAATCTCATCACGACCTG
TTGATGCATGTTCTCAGTGTGTTAGAGTGGCCCAGAGGAGGGTCCCTTGA
GTGTTCTCAGCGTGTTGGGAAACATTTCTGGAAGCTCATGATCTTCATAA
TGAGCTTTTGAGGACTGAGGGAGAGATAGGCATAGGAAACACAGTACGGT
TGCACTCAGACGGACGGCTGTTTGATGTTATATAGGCCTAGTTTATTTTG
CCGATGCACTGTCTGCATACTGCTTATTCTTATATTTACACTCTAATACT
CTTTCTGGATGTTCACACATGTGTACATAATCTATTCCCCCCCCCTTATA
TATTTATTGTGATTGTCCCTTTATATCTCAGCTCCTTTGTCTGTGTGTCT
TTACTACTGTCCCCCATTATCTATTCCATGCCTTTATTTTCGCTTTCTCT
CTTACTGACTTTCCCCTTTCCTTTCTTTTCTCCTTCTTTTTAATATCTCT
TCTTTTTCTCCTCTCAACTGGCTTGTTGTTTATACCTGCGTTTATTTTTA
TTATTATTATCTCGTTTCTATCCCCTTCGTACCGCTTCCTATTTTTTTCC
CCCTTTCTTCCTTATCTGGTTCACTCACCTTGTGCCGTTCATCTGCTTTC
CGGCTTCTG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCGTGGTTGCATTCACTATTGAACTGGCAA
CCAGAAGTCAATGCCCATTTGCTGGGGAACTCTGAGTTGGCATGTTCTTC
CCTTCGGAAGGCTATTTCCTGGGATTAAATCTCTGCCGCTTCTGGAAAAT
CAGCATGGCCTCAGATCTCTGGCTAGATAAAGAGATGTGAGGAGGCATGA
TTCTTCGCCAGAGGAACACAGGTGCATGCTAGACCAGCCCCTGGGCTGAC
GTGTCACTTGGAGAAACTGCTGATGATACATGTCAGACGAGTCTGGCTGA
GTCTATGTCTTTAGGTTGTGTCCTGCTGAATCAATGGGTGCTATGTATGC
CCTGAGCAGTGTTGACACCCTAATGACTGCTCTGTGGCAAGCAAGCGACC
TGGAACAGGTCCAAAAACTGACCATTGAAGACTTTCTACTGACAGGTCAG
AAGGAAGCCCCTAGCAGCTCTGGGTTCTCAAAAGTACAAGCCTAGGAACT
TGTTGCCCTTCTCCCTCTGCATCGTTCTCGTTGAATATTGACGGCCGAGG
ATCCACTACGAGCTACAGATAGTGACTTCTTCCTTGATAGTAACTCCCTG
CCCTTGTGCCCTCATGCTTTTATCCATCCACACTTAGCCAAGACATCGTT
TTTTACTCCTTTTACAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_b18.g1 MSMg01no103_b18.g1 CHROMAT_FILE:
MSMg01no103_b18.g1 PHD_FILE: MSMg01no103_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:55 2005
         (232 letters)



>mm_chr4_56508830_56509461
          Length = 632

 Score =  418 bits (216), Expect = e-121
 Identities = 228/232 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtggttgcattcactattgaactggcaaccagaagtcaatgcccatttgctggggaact 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 201 cgtggttgcattcactattgaactggcaaccagaagtcaatgcctatttgttggggaact 260

                                                                       
Query: 61  ctgagttggcatgttcttcccttcggaaggctatttcctgggattaaatctctgccgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagttggcatgttcttcccttcggaaggctatttcctgggattaaatctctgccgctt 320

                                                                       
Query: 121 ctggaaaatcagcatggcctcagatctctggctagataaagagatgtgaggaggcatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggaaaatcagcatggcctcagatctctggctagataaagagatgtgaggaggcatgat 380

                                                               
Query: 181 tcttcgccagaggaacacaggtgcatgctagaccagcccctgggctgacgtg 232
           |||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 381 tcttcgccagaggaacacaggtgcatgggagaccagcccctgggctgacgtg 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)