ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATGTTCTCCTAAGAAAGGAAAGGAGAACCTTGTAGAAAAGCTTG
ATTTAAAAGAAGGGATCATATGATGGAAAGGTATTTCCCAATATGTGAGA
GATAGCACTACTGTATCAGGACAAGTTCCAATAGGGCCATAAAATGGCCC
CCATTATAATTTTTCCCAGACTCATTTGGAAAAAACGTGTTATTACAATG
ATATCACCAAGAGCTTTTCATATTTTTGTATCTACACTTTAAATAGAACC
TTCCACATTTAAAAGTGAAAAACCCCTTTTTGCCTATAATATTCTTTTGG
CCATTTTGTGACCTTGTAACTCACCAATAACGAAATAAATGGTCACACAA
AGAATTCTGTTTTCCTTTTGACACAAACTATAAGAAGTAGGTTGTGATTA
TCTTTATTGAACAAGTAAGCATGCCACAGTTTGAAAAAAGATTAGATGAT
TCCTAGAGAAAAAAGTATAATAAGGCCAAAATTCCACACTTGTCCACAAA
AACTCTTGTATTTACCCATGCCACAACAGCGCTAAATATTTATATTTTCA
TGTAGCACATAACTAGCATAAATTATAAATATCCAATATAGAATCCACAC
CAGTATTTGGAGGATTAATCTTGCCAAAACAATGATGCTTGATGGGACAC
TACATTGTTACAGC

NTTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATACAGAAGTCTGTATTCATCTC
ATGTTCATCAATTCCTCTACCCTTCCAACTCCTTGCGTGCATCCCTATAC
TCACTCAGATTCATTTTATCTTCTTTAATTATTCTTGTTCATATACATAA
ATGCACACACACAGAGATTACATACAAAATATATAAAAATTGCTAAGTGC
ATTTAATTTTGCTCATATGTACCTGTGCTTAGTGCTGACTACTCAGGATT
CAATCATCTACCAAGGAGCTCAGTCCTGGAGAAAACTGATTCTACTTCTC
TTAGCAGCCATTGACTGCCTGTGGGTCTGCATCTAAGGGTGGGACCCTGT
GAAGTTTCCCCCCAAGCAAGATGTCATGATGACTCATACTGTTATTATTC
AAGCCTTGTTTAGGCAAAGTCATTGTTGAGATTTCCTGGGTACATTTTCC
CTGTCATGTCTAGCAGACACTGACCCATGGTACATGCCCTGGTTCTCTGG
CTCTTACAGCTTTTATGTCCCATTTTCTCTGACAGTTTTAGATTTAGATG
TAGGGGTAGTGCTGTAGAAACACACACTGGGGAGGAGCACCTTATGGTTT
CTTTATTTCTGCATTTTGATCAATTAATTTATCTTGCTAACAGTTTCCAT
CTTGTTTCAGAAA

Query= MSMg01no103_e08.b1 MSMg01no103_e08.b1 CHROMAT_FILE:
MSMg01no103_e08.b1 PHD_FILE: MSMg01no103_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:08 2005
         (600 letters)



>mm_chr4_7460244_7461243
          Length = 1000

 Score = 1083 bits (560), Expect = 0.0
 Identities = 587/596 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatgttctcctaagaaaggaaaggagaaccttgtagaaaagcttgatttaaaa 64
           |||||||||||  || ||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 800 gaattcttatgcacttctaagaaaggaaaggggaaccttgtggaaaagcttgatttaaaa 741

                                                                       
Query: 65  gaagggatcatatgatggaaaggtatttcccaatatgtgagagatagcactactgtatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaagggatcatatgatggaaaggtatttcccaatatgtgagagatagcactactgtatca 681

                                                                       
Query: 125 ggacaagttccaatagggccataaaatggcccccattataatttttcccagactcatttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggacaagttccaatagggccataaaatggcccccattataatttttcccagactcatttg 621

                                                                       
Query: 185 gaaaaaacgtgttattacaatgatatcaccaagagcttttcatatttttgtatctacact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaaaaaacgtgttattacaatgatatcaccaagagcttttcatatttttgtatctacact 561

                                                                       
Query: 245 ttaaatagaaccttccacatttaaaagtgaaaaacccctttttgcctataatattctttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttaaatagaaccttccacatttaaaagtgaaaaacccctttttgcctataatattctttt 501

                                                                       
Query: 305 ggccattttgtgaccttgtaactcaccaataacgaaataaatggtcacacaaagaattct 364
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 500 ggccattttgtgaccttgtaactcaccaataacaaaatcaatggtcacacaaagaattct 441

                                                                       
Query: 365 gttttccttttgacacaaactataagaagtaggttgtgattatctttattgaacaagtaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttttccttttgacacaaactataagaagtaggttgtgattatctttattgaacaagtaa 381

                                                                       
Query: 425 gcatgccacagtttgaaaaaagattagatgattcctagagaaaaaagtataataaggcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcatgccacagtttgaaaaaagattagatgattcctagagaaaaaagtataataaggcca 321

                                                                       
Query: 485 aaattccacacttgtccacaaaaactcttgtatttacccatgccacaacagcgctaaata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaattccacacttgtccacaaaaactcttgtatttacccatgccacaacagcgctaaata 261

                                                                   
Query: 545 tttatattttcatgtagcacataactagcataaattataaatatccaatatagaat 600
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttatattttcatgtagtaaataactagcataaattataaatatccaatatagaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)