Query= MSMg01no103_e13.b1 MSMg01no103_e13.b1 CHROMAT_FILE:
MSMg01no103_e13.b1 PHD_FILE: MSMg01no103_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:09 2005
(601 letters)
>mm_chr4_83951229_83952227
Length = 999
Score = 1006 bits (520), Expect = 0.0
Identities = 579/612 (94%), Gaps = 24/612 (3%)
Strand = Plus / Plus
Query: 4 ggaattctggatcctatctcccccctaccgcctaccttgatgattatgcctgaactgttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ggaattctggatcctatctcccccctaccgcctaccttgatgattatgcctgaactgttt 257
Query: 64 acttaggatgcaattaaaggtgctgggtcctctgggataattttgattcctggtcaacta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acttaggatgcaattaaaggtgctgggtcctctgggataattttgattcctggtcaacta 317
Query: 124 aatatccagtttagtcacaactttgcttaaaaattgggcaattgtcctgattagttccta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aatatccagtttagtcacaactttgcttaaaaattgggcaattgtcctgattagttccta 377
Query: 184 tagggccttcatatacctgcccacacc-------------actttgaagggcttatgaaa 230
||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 378 tagggccttcatatacctgtccacaccactgtccaataaaactttgaagggcttatgaaa 437
Query: 231 attctgcaacttgaagattgaattgcatcc-ttttttgtgaagtgttaatatatccatat 289
|||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||
Sbjct: 438 attctgcaacttgaagattgaattgcatcctttttttgtgaggtgttaataaatccatat 497
Query: 290 atataattatccacatatctacataaatccatatagtctccaacagattttgtggttctg 349
|||||||||||| ||||||||||||||||||||||||||| | | ||||||||
Sbjct: 498 atataattatcc--------acataaatccatatagtctccaacagactatatggttctg 549
Query: 350 aaaagacagtggcagtaatgtatacaagactctctccccaaactctttagacactgggca 409
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaaag--agtggcagtaatgtatacaagactctctccccaaactctttagacactgggca 607
Query: 410 ttcacatggaacccagtgagagtcctgtgagtaaatcatttatgttcaggatagcaaggg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttcacatggaacccagtgagagtcctgtgagtaaatcatttatgttcaggatagcaaggg 667
Query: 470 ggtggtttgaactccacagagcaaaagccagaaacaggaggaaagagaggggtttccctc 529
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 668 ggtggtttgaactccacagagcaaacgccagaaacaggaggaaagagaggggtttcccac 727
Query: 530 taatgaccttgttttcgtctcctcttggatgtaaagatgaagctgatgtcctgggatagc 589
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 728 taatgaccttgttttcgtctcctcttggacgtaaagatgaagctgatgtcctgggatagc 787
Query: 590 tataaatctgct 601
||||||||||||
Sbjct: 788 tataaatctgct 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 999
Length adjustment: 10
Effective length of query: 591
Effective length of database: 989
Effective search space: 584499
Effective search space used: 584499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_e13.g1 MSMg01no103_e13.g1 CHROMAT_FILE:
MSMg01no103_e13.g1 PHD_FILE: MSMg01no103_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:09 2005
(366 letters)
>mm_chr4_84086856_84087621
Length = 766
Score = 677 bits (350), Expect = 0.0
Identities = 362/366 (98%)
Strand = Plus / Minus
Query: 1 agttgacatgactttataatgctgttctttcaagttactaaatcctaaacaaaaacgagc 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 566 agttgacatgactttataatgttgttctttcaagttactaaatcctaaacaaaaatgagc 507
Query: 61 acagagtgaccagctgcggcagcaagctgtgcatgtcttctatcactagcatgtagagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acagagtgaccagctgcggcagcaagctgtgcatgtcttctatcactagcatgtagagtg 447
Query: 121 agggcgttcttaccttggttttctgtcttaattcaagcattgaaatggtagccctaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agggcgttcttaccttggttttctgtcttaattcaagcattgaaatggtagccctaccat 387
Query: 181 tatctgtcaatcccaccttccaactaacaggtatcctggctcctctttgaagctgctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatctgtcaatcccaccttccaactaacaggtatcctggctcctctttgaagctgctttg 327
Query: 241 gagtcttaagattgattgataaccaaaccaaagcaataggatgaatgtaaagagctggat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 326 gagtcttaagattgattgataaccaaaccaaagcaataggatgaatgtaaagagttggat 267
Query: 301 ttttccatggcatttaaaaatggcatttgtgccacactgtgctttacagctattttccag 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttttacatggcatttaaaaatggcatttgtgccacactgtgctttacagctattttccag 207
Query: 361 ataatt 366
||||||
Sbjct: 206 ataatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
