BAC Information

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BAC

Clone NameMSMg01-103G16
Chromosome4 (Build37)
Map Location 16,095,835 - 16,096,078
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2
Downstream geneLOC667150, LOC383994, LOC100040154, LOC667212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103G16.T7 (MSMg01no103_g16.b1)MSMg01-103G16.TJ (MSMg01no103_g16.g1)
ACCAG318289AG318290
length710709
length of high quality
(start - end)
245 (75 - 319)586 (74 - 659)
definitionCHROMAT_FILE: MSMg01no103_g16.b1 PHD_FILE: MSMg01no103_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:20 2005CHROMAT_FILE: MSMg01no103_g16.g1 PHD_FILE: MSMg01no103_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCG
GAATTCCCCATGTCCCAAGATGGTGCTGGACAAAGAATCATTAGTACAAA
ATTTTCCTGGGAATTTCCATTTTCCTGTGGGATTTTATTTGGCAGGTTTC
TCGAAATGTGCAGGAACGTACATATAACTAGTTGGCTAGTCTAAATCTAG
GAATTTCAGTGCCTGAATTTAACAGAATAGTTTGCTTTTCTATTTTTTTT
TTCCATAGCTCAAAAATCACGTTCCCTGTCATTCCAAAGTTATAAGCAAG
ACATGCTGAGTTATACTACCTTTTATGGCACAGCGATTTTCTCTTTAGGA
AGCCAGTCTGTGAATGACCGATGTGCGCTTAGTACCCTTTTATAGATCCT
GTTTGGGGCAGAGACCGCACTGTGGACAATAGGCAAAGCTGTCCCTACTG
AAGTAGCCTGTGGCGATTAGGTCTTAACAGATAAGGCTAGCACAGCCTCG
CGTAAGCAGGAAGCGTGATTAATCACAGATTCAATATCAGTGGTCTAAGA
GATTTCTCGGCAGAAGCTGACGTGTATCTGGAAAACACCACGCACCATGT
AACATCTGTGACCCTACATCGTTCCACAATTGTTAATATGCGCTGACCTA
TGCATCTTTCCCAGGGAAGCATTGCTTCCCAACCCCATAATGCACTCTTT
ATATTAAGGC
NCCACCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTCAGCGAAATTCCTAGCCAGAGCAATTAGACAACA
AAAGGAGATCAAGGGAATACAAATTGGAAAGGAAGAAGTCAAAATATCAC
TTTTTCAGATGATATGATAGTATATATAAGTGACCCAAAAATTCCACCAG
AGAACTCCTAAGCCTGATAAACAGCTTCAATGAAGTAGCTGGATATAAAA
TTAACTCAAACAAGTCAATGGACTTTTTGTACACAAAGGATAAACAGGCT
GAGAAAGAAATTAGGGAAACACCTTCCTTCTCAATAGTCACAAATAATAT
AAAATACCTTGATATGACTCTAACTAACGAAGTGAAAGGTTTGTATGATA
AGAACTTCAAGTCTCTGACGAAAGAAATTAAAGAAGATCTCAGAAGATGG
AAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTATAAAAATGGC
TATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTC
TAACTCAATTCTTCAACGAATTAGAAAGAGCAACCTGCAAATTCATCTGG
AATAACAAAAACCCTATGATAGCAAAAACTTTTGTCAAGGATAAAAGAAC
CTCTGGTGGAATCATCATGCCTGACCTAAAGCTGTACTACAGAGCAATTG
TGATTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_g16.b1 MSMg01no103_g16.b1 CHROMAT_FILE:
MSMg01no103_g16.b1 PHD_FILE: MSMg01no103_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:20 2005
         (245 letters)



>mm_chr4_16095635_16096278
          Length = 644

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctggacaaagaatcattagtacaaaattttcctgggaatttccattttcctgtgggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctggacaaagaatcattagtacaaaattttcctgggaatttccattttcctgtgggatt 260

                                                                       
Query: 61  ttatttggcaggtttctcgaaatgtgcaggaacgtacatataactagttggctagtctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttggcaggtttctcgaaatgtgcaggaacgtacatataactagttggctagtctaa 320

                                                                       
Query: 121 atctaggaatttcagtgcctgaatttaacagaatagtttgcttttctattttttttttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 atctaggaatttcagtgcctgaatttaacagaatagtttgcttttctattttttttt-cc 379

                                                                       
Query: 181 atagctcaaaaatcacgttccctgtcattccaaagttataagcaagacatgctgagttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atagctcaaaaatcacgttccctgtcattccaaagttataagcaagacatgctgagttat 439

                
Query: 241 actac 245
           |||||
Sbjct: 440 actac 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space:   149860
Effective search space used:   149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)