TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTCTAGTTCCTACCCCATTTTAAAATTGTGTTATTTGTGATTT
TTTGAGGTTAACTTCTTGAGTTCCTAATATATTTTGGATATAAGCCCTCT
GTCAGATGTAGGATTGGTAAAGATCTTTTCCTAATTTGTAGGTTGCTATT
TTTTCCTATTGACAATGGCTTTACAGAAGCATTTCAATTTTATGAGGTCG
CATTTGTCAATTGTTGATGTTAGAACTTGAGACATTGTTGTTCTCTTCAC
AAATTTCCCCTGTGCCAATGCATTTGAGGTTCTTTCCCACTTTTTCTTCT
ATTAGATTCAATGTATCTGGTTTTATGCTGAGGTCCTTGATCCACTTGGA
CTTGAGCTTTGTACAAGGTGATAAATATGGATGGATCTATTTTCATTCTT
GTACATGCAGATCACCAGTTAGACCAGCACCATTTACTGAAGATGCTTTT
GTTTTTCACTGTATGTTTTTCTCTTCTTTGACAAAGATCAAGTGTCCATA
GGTGTGTGGATTTATTTCTGTGTCTTCAATTCTATTCCATTGATCCACTT
GTCTTTCTCTGTTCCAATAGCATGAGTTTTTATCTTTAATTTTTAAATTT
TTCTTTTATTCTTTTTTATCATTATTAAAAGCCAAGGATGATGATACCTC
CAGAAGTTCTTTTATTG

AATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCTGATCTCTCATGCAGAGCTTGAATGATCA
TCTTCTTTTGATCTTGAAGGTTAAGCCACAGAATAGGAGTTGCGTCTTTT
GTTATATTTCCTCTTAGACATTCCAGCTTGAAACAAATAATTCTTCCAGA
TTTCCCAATACTCCATTTTGCAAAAGGCACGGCAGAGGATTCTGAGCATG
CACAGCTAGCTGGTTATCTCTATCTCTCTGTGTCAAGAGATACAAGAGAA
ACAAAGAGTTTCCTGTTACTTCTATTTCTCTGAAGAATCTTGACTAATAC
AGCCCACATTTCATCTATCAGTACAGATCATTCTCTGAAGTTATCACTTT
ATTTTAATTTCACTCCTATTTAACAGCCAATTATTATGAAGAAGTGATGT
TACTTAATATTGTGAAAAATCTCAGACTCAATTGAATGACTAAGAATAAG
GAAAGAAAAAGATTTTCTTCCAATGTATCTATTCAATACTTCAGAGTCTT
TGATCTGGGTAGCTAACGTATCAACAGGTGCTTTTTGAGATCTTACTGTG
TTTCACCAAAATCCTATTTGACACTAAATATGTGTCTTCTAGGTTCCATG
CTCTTGAATTCATATAATAAAATAGATCTACAAGATTTGCCATGAAACAA
TGGATCAGCCCATACAATACAACCGATATCATAT

Query= MSMg01no103_g23.g1 MSMg01no103_g23.g1 CHROMAT_FILE:
MSMg01no103_g23.g1 PHD_FILE: MSMg01no103_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:21 2005
         (608 letters)



>mm_chr4_16416337_16417344
          Length = 1008

 Score =  990 bits (512), Expect = 0.0
 Identities = 521/524 (99%)
 Strand = Plus / Minus

                                                                        
Query: 85   tatatttcctcttagacattccagcttgaaacaaataattcttccagatttcccaatact 144
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1008 tatatttcctcttagacattccagcttgaaacaaataattcttctagatttcccaatact 949

                                                                        
Query: 145  ccattttgcaaaaggcacggcagaggattctgagcatgcacagctagctggttatctcta 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  ccattttgcaaaaggcacggcagaggattctgagcatgcacagctagctggttatctcta 889

                                                                        
Query: 205  tctctctgtgtcaagagatacaagagaaacaaagagtttcctgttacttctatttctctg 264
            ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 888  tctctttgtgtcaagagatacaagagaaacaaagagtttcctattacttctatttctctg 829

                                                                        
Query: 265  aagaatcttgactaatacagcccacatttcatctatcagtacagatcattctctgaagtt 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828  aagaatcttgactaatacagcccacatttcatctatcagtacagatcattctctgaagtt 769

                                                                        
Query: 325  atcactttattttaatttcactcctatttaacagccaattattatgaagaagtgatgtta 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768  atcactttattttaatttcactcctatttaacagccaattattatgaagaagtgatgtta 709

                                                                        
Query: 385  cttaatattgtgaaaaatctcagactcaattgaatgactaagaataaggaaagaaaaaga 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708  cttaatattgtgaaaaatctcagactcaattgaatgactaagaataaggaaagaaaaaga 649

                                                                        
Query: 445  ttttcttccaatgtatctattcaatacttcagagtctttgatctgggtagctaacgtatc 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648  ttttcttccaatgtatctattcaatacttcagagtctttgatctgggtagctaacgtatc 589

                                                                        
Query: 505  aacaggtgctttttgagatcttactgtgtttcaccaaaatcctatttgacactaaatatg 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588  aacaggtgctttttgagatcttactgtgtttcaccaaaatcctatttgacactaaatatg 529

                                                        
Query: 565  tgtcttctaggttccatgctcttgaattcatataataaaataga 608
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528  tgtcttctaggttccatgctcttgaattcatataataaaataga 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)