BAC Information

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BAC

Clone NameMSMg01-103I01
Chromosome4 (Build37)
Map Location 132,395,318 - 132,395,676
singlet/doubletsinglet
Overlap genePpp1r8
Upstream geneMecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917
Downstream geneStx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103I01.T7 (MSMg01no103_i01.b1)MSMg01-103I01.TJ (MSMg01no103_i01.g1)
ACCAG318353AG318354
length699732
length of high quality
(start - end)
442 (79 - 520)68 (205 - 272)
definitionCHROMAT_FILE: MSMg01no103_i01.b1 PHD_FILE: MSMg01no103_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:27 2005CHROMAT_FILE: MSMg01no103_i01.g1 PHD_FILE: MSMg01no103_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAAT
GCGCGGAATTCCAGCTTCTATCCAAAGTTTCTAGAGTCACGTCAGATTTT
AGAGTACAGTAACTAGGTATTTTGTTCAACTGGTTTTGAGATAGGGTCTC
ACTCTATAGCCCTTGTTGGCCTGGAATTCACAGTGATCCACCTGCCTCTC
CCTCCCAAGGGCTGGATGTTCTTTTATATTTGAGATAGATTTCTACTCTA
GCCTGTATTGGCCTTGAACTCACTGTGTAGCCATAGCTGGCTTTACCTCT
TAATGATAATCCTACCTCCGTCCCCCAAGGTCTGGGGTTGTGTGAGTCAC
CATATCTGGCTTACTTATATTAAGATACATAATTATTTACCAAGAAAAAG
AGAGTAAGCCCACTGATTTAATAGTTAGAAATTAAGCTCGAAGCTCTGTT
ATTGATTATAATTATTTTTCCTTGGTGCATTCAATAAAAAAACATGACAT
TTCACAGACTTTTAAACTCAAAAGCAAGGCGTTGTTTTGGGGCTGTGGCA
GAGGAAATGCGCAGTCTCACACAGTTCCTTTGTCATGGGTTCTTTTATGA
AAAACACAAAAATCCAAAACTCAAATGACTATTCAAGGAAATAATTAAAA
ATATCCTGAAACCTCTTTCACTACATGTGGTTCCCTAGATAGAAAAAAA
NCGATGATGTGGGAGGCCTGGCGGCCGCCTGTTTCCAAAACAGGXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTCTTAGTGGAGGTTTTCTTGCTG
GCTTTCCCCTGGAGAACTTTGTGCTGCTCAGTTTGGTCCTTCTGGTGGGT
GGCTGCAGTATGAACCATGTTTCTCTGCTTGTCGTGAGATAGAAGAGTTC
ATAACTGATGCCTGGCAACACTGACTACTACCCTGTCTACCTGAGCAAAG
CCCTGTGCTATTTCCTAATCACTGATGTTTGACCTTACAACCCGATAGAT
CCCGCTCTTACAAAACCACGTCCCATTTCTAGACATTCTAACTAGCTACT
TCGACACAATATTTCTTTACCCGACCCCATGACATTCTTTCCTATTTTCC
GAGCCTTTGATGCTTCACCGCACTCCTTCTCTTCCTCTTATCCTATTGCC
GCCTACCTTTTCCTTCATTTGCCCGCCTGTGCCTCTTTTATCTCCCCACT
TTCATTGCCTTTCTCCCACCCATTTTTCGAATCTCCTAATTACCCTTCTT
CTACCGTTCCTTTCTGTCTTCTTTCCTCTTTTCCCCCTTTCCCCACCTTT
CCCCTCCTTTTCCCTGTTTCCCCCTCCCCCCCGCCTTTCCCCCCCTTTTA
TTAACTTTCCATTTCTCTCCCCCTTTCACTCACCCCCCTTTCCCCCTTTT
TCCACACCCTTTTCATTTCACCCACCTTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_i01.b1 MSMg01no103_i01.b1 CHROMAT_FILE:
MSMg01no103_i01.b1 PHD_FILE: MSMg01no103_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:27 2005
         (442 letters)



>mm_chr4_132394835_132395676
          Length = 842

 Score =  679 bits (351), Expect = 0.0
 Identities = 357/359 (99%)
 Strand = Plus / Minus

                                                                       
Query: 84  cttgttggcctggaattcacagtgatccacctgcctctccctcccaagggctggatgttc 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 cttgttggcctggaattcacagtgatccacctgcctctccctcccaagggctggatgttc 783

                                                                       
Query: 144 ttttatatttgagatagatttctactctagcctgtattggccttgaactcactgtgtagc 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ttttatatttgagatagatttctactctagcctgtattggccttgaactcactgtgtagc 723

                                                                       
Query: 204 catagctggctttacctcttaatgataatcctacctccgtcccccaaggtctggggttgt 263
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 722 catagctggctttacctcttaatgataatcctacctccgtcccccaagggctggggttgt 663

                                                                       
Query: 264 gtgagtcaccatatctggcttacttatattaagatacataattatttaccaagaaaaaga 323
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 662 gtgagtcaccatatctggcttacttatattaagatatataattatttaccaagaaaaaga 603

                                                                       
Query: 324 gagtaagcccactgatttaatagttagaaattaagctcgaagctctgttattgattataa 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gagtaagcccactgatttaatagttagaaattaagctcgaagctctgttattgattataa 543

                                                                      
Query: 384 ttatttttccttggtgcattcaataaaaaaacatgacatttcacagacttttaaactca 442
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttatttttccttggtgcattcaataaaaaaacatgacatttcacagacttttaaactca 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)