CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAATCTGTCACTTGATATTGTTTGTTGTGAATATGTATCAGG
TCTATAAACTAAGCGGGGTACCTAGGAATCCTGCATGTGGCTTGGTATAT
AGGGATGCTTTAATGGAATTACAGAAAATATATGGAAGGAAATTTTCAGC
AAAGTTCAGCATATTGAATAGACAAAATCTATCTACCATAATTAACAATT
CCAAGCTTTGCATTGAAACAGTAACTAGATATAACACATAGTCTAAAGAT
AAAATCACTAATAACAATTAGTCCTTAAAATTTCGTTTTTTTTTTCATTC
ATTTCAAGTTAACTTAATGCAATGAGACTGCAATTACAACTGCATTTTTA
TGTAACTAAGTTTTATAGTAGAAACCCTGTTTGTTTATTTGTTTTGTAAA
TAATGATCACTTTTGATGTATCATTAAAATTTAGTTGAAAAATTCTAAGA
ATTGTTTTAATAATTACTCTCTTATTTAAAGTTTAAAGAGAAAATATTTT
TACAATAAAATTATTAAAATATTTTATTGTCTTTATGTATAAGTTAGTAT
TCGGTTTAAACAAAAAAAATTGAAGTACAACAGGAGAGGGGAGAGCGACA
TTAGTTCTCACGGTCCAGGTTCAACTGGGTCTCCCCCCAAAATTATATTT
CGT

NCGATGATGTGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATATATTGAACCACCCCTACATCACT
GGGAAGAAGCTTACTTGATCATGATTGATCATTTTGTTGTTTTCTTGGAT
TCTGTTTGAGAGTATTTTATTGAATATTTTTGCATTGATATTCATAAAGA
AAATTGGTCTGAAGTACTCTTTCTTTGTTGGGTCTTTGTGTGGTTTAGGT
ATCATAGTAATTGTGGCTTCATAGAATGAGTTGGGTAGAGTACCGTCTGT
TTCTATGTTGTGGAAAAGTTTGAGGAGTATTGGAATTAGGTCTTTTAATC
GAACTCTGCACTAAACCCAACTGGTCCTTGCCTTTTTGTTGTTGATGTTG
TTGCTGTTGCTGTTGCCGCCCATTATTTTACCCTTTTCCTTTTTCCCTTT
TCCTTTTCACCGTTTTACCCTCTCACTTATCCTTCTTTTCCTTCTCTTTT
TTTATCTCTCTTCTCCACCATCTATTTTCCCTACTCCACTTATAACTTCC
TTCATCACATTACCTTATCTTCTTTCTTTCTCTCTTTTTCCTCATTTACC
CCTCTCTTTCCCCCACTTTTTCAATTTTTCCTCTTATCCCCACCCCCTTA
CCAAATTAGGANTTTCCTTTTCCATTTCCTTACCCCTTTTTCCCTTCCAC
CCCCTCTCCCCCTTTTACCCATTCTTANTTCCTTTTACCCCACCTTTTTC
T

Query= MSMg01no103_m05.b1 MSMg01no103_m05.b1 CHROMAT_FILE:
MSMg01no103_m05.b1 PHD_FILE: MSMg01no103_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:47 2005
         (632 letters)



>mm_chr4_92245790_92246819
          Length = 1030

 Score = 1166 bits (603), Expect = 0.0
 Identities = 625/633 (98%), Gaps = 3/633 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatattgtttgttgtgaatatgtatcaggtctataaactaagcggggtacctaggaatcc 60
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 667 gatattgtttgttgtgaatatgtatcaggtctataaattaagcagggtacctaggaatcc 608

                                                                       
Query: 61  tgcatgtggcttggtatatagggatgctttaatggaattacagaaaatatatggaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgcatgtggcttggtatatagggatgctttaatggaattacagaaaatatatggaaggaa 548

                                                                       
Query: 121 attttcagcaaagttcagcatattgaatagacaaaatctatctaccataattaacaattc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 547 attttcagcaaagttcagcatattgaatagacaaaatcaatctaccataattaacaattc 488

                                                                       
Query: 181 caagctttgcattgaaacagtaactagatataacacatagtctaaagataaaatcactaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 487 caagctttgcattgaaacagtaactagatataacacatagtctaaagataaaatcattaa 428

                                                                       
Query: 241 taacaattagtccttaaaatttcgttttttttttcattcatttcaagttaacttaatgca 300
           ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 427 taaaaattagtccttaaaatttcg--ttttttttcattcatttcaagttaacttaatgca 370

                                                                       
Query: 301 atgagactgcaattacaactgcatttttatgtaactaagttttatagtagaaaccctgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atgagactgcaattacaactgcatttttatgtaactaagttttatagtagaaaccctgtt 310

                                                                       
Query: 361 tgtttatttgttttgtaaataatgatcacttttgatgtatcattaaaatttagttgaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgtttatttgttttgtaaataatgatcacttttgatgtatcattaaaatttagttgaaaa 250

                                                                       
Query: 421 attctaagaattgttttaataattactctcttatttaaagtttaaagagaaaatattttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attctaagaattgttttaataattactctcttatttaaagtttaaagagaaaatattttt 190

                                                                       
Query: 481 acaataaaattattaaaatattttattgtctttatgtataagttagtattcggtttaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 acaataaaattattaaaatattttattgtctttatgtataagttagtattcggtttaaac 130

                                                                       
Query: 541 -aaaaaaaattgaagtacaacaggagaggggagagcgacattagttctcacggtccaggt 599
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aaaaaaaaattgaagtacaacaggagaggggagagcgacattagttctcacggtccaggt 70

                                            
Query: 600 tcaactgggtctccccccaaaattatatttcgt 632
           |||||||||||||||||||||||||||||||||
Sbjct: 69  tcaactgggtctccccccaaaattatatttcgt 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1030
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1020
Effective search space:   634440
Effective search space used:   634440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)