BAC Information

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BAC

Clone NameMSMg01-103P06
Chromosome4 (Build37)
Map Location 84,132,239 - 84,132,357
singlet/doubletsinglet
Overlap geneBnc2
Upstream genePsip1, LOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103P06.T7 (MSMg01no103_p06.b1)MSMg01-103P06.TJ (MSMg01no103_p06.g1)
ACCAG318691AG318692
length731694
length of high quality
(start - end)
41 (101 - 141)119 (145 - 263)
definitionCHROMAT_FILE: MSMg01no103_p06.b1 PHD_FILE: MSMg01no103_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:02 2005CHROMAT_FILE: MSMg01no103_p06.g1 PHD_FILE: MSMg01no103_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCGCATCTTCCCTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTCAGAGAAGCGGTGGAACTCCTCATATTTTCCGATAGGAGGCAGGGGCC
ACCAAATGTAGTTTTGAGGTTAGGGCAGACAAATTTGAAGGGTCTTTTAG
CTGAGGTCAGATGGATAAAGAGAAATGAAGTCACCTCACACGGAGGGCAT
GGTGCTCTTGAGGTGAGGATGCTGGCTGTCACTGGTGATGCAGAGAGAAC
ACAACCAGTTATGACTGGCGAGTACGCTGGGGCTGCCCCTCCATGGGAGG
CGCCTGGAGGTTTTCAGCAGAATTTTGACTCAGACCATTCTTTCTGTTTT
AAAGATCATGGCCATTGTGTTAGTCTCTCTGAAGTGGTCCCCCTGCATCC
AGGGTTATCACTTGTCCCATGTGACATGAACACTGATCCTTTATGGAACG
AAGCCTCGCACCCAGCATTTTCTTACATGTTACGTCTCCCGCCTATTCCT
GCCCGAACTATGACTTCCGCCAACCCACATTACACTCTGGGCTATTCGTA
CCTTTATTCACACCTTTAGTATTCCCTCCATGATCTCTCCTCACGTCTTC
TCATACTATGCTCGAACGAATTTATAAAGATATTAAACATTGTAATTACC
CCTATCCTGATTCCCTCTTTGTTCCCCTACCTACCTGTTCCATCTCCAGC
CCCTGGTCGTACGCACCACCCAATCACCCCA
NTTCATGAAGCGGTAGCCTGGTGGCGCCTGCCTCAAAAATGAGGTGAACT
ATAGAAGGTTTCCCGCAATTCCTACAGCAGGAGCAGGATGGAATCTATAA
GTCCCATGAGGTTACCTACAGGCCATGGTCATCTGTACTGTGACATCTAC
CATTCAGTAATTCTCTAAACCAGTACTGTGTGCAGAAAGAACGGAAATGC
TCATTGTTAAACTGTTTACAATTGATATCACTTCGAAAATGTGTGTTCTT
AACTGCATTTACATCCAACTTCACAGTATACCATAAGAATAGCATTCATC
CAGCATAATACACACATCATATTTTATAAATAGTCAACAGGCCATATATT
TTACCCAGTTTCCCTAAACGTCACCGCAAAACATGGCCACGTTATCTTGT
TCTGTTCTAAACCATCTGTTCATTCCCGAAACCTTACGCAAACTACTTAA
TCTTTCTCACAGTTTCTTTATTTTCAATCATGTTGGTACTGACGTCCAAT
CTGCCTTAATCCCAAATTCCCCCACACAGTCAACCTCCCAATACTATATG
CCACTGATTACGTCCTTATTAACCCGCATGACACCCCCCTACGCTCGATA
ATCTGACCGGCCTTTTTTTATAGCACTCCCTTAATGCCCTTTCCCTCCCC
ATCCCCGTATTCCCGCACCTTCTGTGTTCCCCATTTTCCTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_p06.g1 MSMg01no103_p06.g1 CHROMAT_FILE:
MSMg01no103_p06.g1 PHD_FILE: MSMg01no103_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:02 2005
         (119 letters)



>mm_chr4_84132039_84132557
          Length = 519

 Score =  207 bits (107), Expect = 2e-58
 Identities = 116/119 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctaccattcagtaattctctaaaccagtactgtgtgcagaaagaacggaaatgctcat 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctaccattcggtaattctctaaaccagtactgtgtgcagaaagaacggaaatgctcat 260

                                                                      
Query: 61  tgttaaactgtttacaattgatatcacttcgaaaatgtgtgttcttaactgcatttaca 119
           ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgttaaactgtttacaactgatatcacttcgaaaatgtgtgttcttaaatgcatttaca 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)