BAC Information

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BAC

Clone NameMSMg01-104B14
Chromosome4 (Build37)
Map Location 88,804,313 - 88,804,557
singlet/doubletsinglet
Overlap geneMtap
Upstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617
Downstream geneLOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104B14.T7 (MSMg01no104_b14.b1)MSMg01-104B14.TJ (MSMg01no104_b14.g1)
ACCAG318797AG318798
length759715
length of high quality
(start - end)
163 (126 - 288)245 (70 - 314)
definitionCHROMAT_FILE: MSMg01no104_b14.b1 PHD_FILE: MSMg01no104_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:14 2005CHROMAT_FILE: MSMg01no104_b14.g1 PHD_FILE: MSMg01no104_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCCTTCTTTTCAANCACCATGTTAAATGATGGGGTGACTATGCTCGGG
GCCTAGCAAACACATAATGAGCCGCTCACAGTCAGCTAATGGATGGATCA
CAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGA
TCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGA
TCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATC
ACTGGAAAGAGAGGCTTTTTTTTCATGCACACTTCATTTGCCCCAGCACA
GGGGATTTTTTGTTCCCCCCCCCGCCAGTGGTTGGTTAGTTTTAGTGGAC
CATCCACCATCTTATTACTACAACAACTCAAACATCGTACCCCCCTTTTT
CATTTCTATATTCCCCTCCTCATACACTCCTCCCATTTTATCCACCTATC
ACTGTTTCCTATTATCCCTCCATCCTCATCTATCCTTTTTTCTTACTCCA
CGTTCCTATCTTGCTTATTTTCTCATTCTATTCCATATTTCTCCACCTCT
TCTATCCTCATCTTTTTTTTCCTTCTCCACTCTCTCCTTTTTCTTTCTTC
CTTCCCCCTCAATATCTTTTTCACCCTTTATATTTTCCCTTTGTGTGTGC
TTCCCCACCACTACTCTCCTTCTATCAGTTCGTCCTTTACTCTCCTACCT
CTCATTTCG
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACAGATCCACCTGTCTCTGCTTCAGAATGCT
GGGATTAAAAGGTGAGTGCCATCACCGCCTGGCAGTGTTATTTTTGCTTT
CTCTCCATTGAATCAAAGTGGATGCTGAGCACTGCACAGAAGCCAACTCA
CGGAGAACTGTCACTAACAAGAGGACATGCCCTTCCTAGCAGACAACAAA
CACTAAATAAGAAAGAGAACAGTCAGCTGGGTGGTGGTGGCGCACACCTT
TAATCCCAGCACTCGGGAGGCAGAGGTAGGAGGATTTCTGAGTTCGAGGC
CAGCCTGGCCTACAAGAGCGAGTTCCAGGACAGCCAGGGCTATACATAGA
AACCCTGTTTCTAAAAAACAAAAACAAAACCCAAAACAAAAAAAACCCAG
AAAGACAACAGTCATGTGTGACAAGATGAACCTGGAGGGATCTCTTGAAC
CGAATTAAAGAAGTGAGAAACATATAGACCGCACCAGGAACTACTCACAC
GTACCGATCCGAACTGTACTCCCTGAAGCAGAGGGTAAAAAGGAATTTAC
CATGACACTCACAATGGAAACCATCTACGCACGAAAATATAATGACTGCG
ATTACCTATGCCTCCAGTATCTGACCGCACCAAAGTCACATCCATCTCTT
TTGAGTTCTCAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_b14.g1 MSMg01no104_b14.g1 CHROMAT_FILE:
MSMg01no104_b14.g1 PHD_FILE: MSMg01no104_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:14 2005
         (245 letters)



>mm_chr4_88804089_88804733
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagatccacctgtctctgcttcagaatgctgggattaaaaggtgagtgccatcaccgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 acagatccacctgtctctgcttcagaatgctgggattaaaaggtgagtgccatcaccgcc 410

                                                                       
Query: 61  tggcagtgttatttttgctttctctccattgaatcaaagtggatgctgagcactgcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tggcagtgttatttttgctttctctccattgaatcaaagtggatgctgagcactgcacag 350

                                                                       
Query: 121 aagccaactcacggagaactgtcactaacaagaggacatgcccttcctagcagacaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aagccaactcacggagaactgtcactaacaagaggacatgcccttcctagcagacaacaa 290

                                                                       
Query: 181 acactaaataagaaagagaacagtcagctgggtggtggtggcgcacacctttaatcccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 acactaaataagaaagagaacagtcagctgggtggtggtggcgcacacctttaatcccag 230

                
Query: 241 cactc 245
           |||||
Sbjct: 229 cactc 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)