Query= MSMg01no104_c17.b1 MSMg01no104_c17.b1 CHROMAT_FILE:
MSMg01no104_c17.b1 PHD_FILE: MSMg01no104_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:20 2005
(379 letters)
>mm_chr4_122527222_122528000
Length = 779
Score = 675 bits (349), Expect = 0.0
Identities = 367/373 (98%), Gaps = 2/373 (0%)
Strand = Plus / Plus
Query: 8 gaattcctagtaattattacggtt-ggactggatttaaatccagtagggctgtatttaaa 66
|||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcctagtaattaaaa-ggtttggactggatttaaatccagtagggctgtatttaaa 266
Query: 67 acactgagctttctatttcttttgttgttgttgttgtttgtttgtttgttttttgcgaca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 267 acactgagctttctatttcttttgttgttgttgttgtttgtttgtttgtttttcgagaca 326
Query: 127 gggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcg 386
Query: 187 aactcagaaatcggcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccacca 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aactcagaaatcggcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccacca 446
Query: 247 cgcccggctgagctttctatttctatttcctctccaggtgttgtcatttgttctctcttc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cgcccggctgagctttctatttctatttcctctccaggtgttgtcatttgttctctcttc 506
Query: 307 cagttgcagctttgaagtcttttattttcatagtctcatcaaatatgaattactatttgc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cagttgcagctttgaagtcttttattttcatagtctcatcaaatatgaattactatttgc 566
Query: 367 cacacctggtggc 379
|||||||||||||
Sbjct: 567 cacacctggtggc 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_c17.g1 MSMg01no104_c17.g1 CHROMAT_FILE:
MSMg01no104_c17.g1 PHD_FILE: MSMg01no104_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:20 2005
(625 letters)
>mm_chr4_122617044_122618068
Length = 1025
Score = 888 bits (459), Expect = 0.0
Identities = 492/503 (97%)
Strand = Plus / Minus
Query: 1 atttcttcagtcacaccatacttaccttccgagttgacatacgtgaggctgtggactgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 atttcttcagtcacaccatacttaccttccgagttgacatacgtgaggctgtggactgtg 484
Query: 61 ttgtcagagaacattgctaccattgcagaaggttttattgttctgagtcaagtgagaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttgtcagagaacattgctaccattgcagaaggttttattgttctgagtcaagtgagaagg 424
Query: 121 aatggtaaaacagaagactttatttctggggggaaaatgtaaacaaaggcatctcctagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aatggtaaaacagaagactttatttctggggggaaaatgtaaacaaaggcatctcctagg 364
Query: 181 aacagcaaagaaacagttctttgatgaaccacataacttaggttttggtcatggacttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aacagcaaagaaacagttctttgatgaaccacataacttaggttttggtcatggacttct 304
Query: 241 tgcatggacctctttgagtgttaggaagcagacaaagtaccacccttttgagaatcttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgcatggacctctttgagtgttaggaagcagacaaagtaccacccttttgagaatcttct 244
Query: 301 ctgattccttcaacctaggagagagcttcctccaggcctcctgcatttgtcttgttatca 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 243 ctgattccttcaacctaggagagagcttcctccaggcctcctgtatttgtcttgttatca 184
Query: 361 ttgacacaaaatacccgacacaaacaacttgtgagagaaaggctttcttttggctcattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttgacacaaaatacccgacacaaacaacttgtgagagaaaggctttcttttggctcattg 124
Query: 421 taaagtttctttctttctatctatctatctatctatctatctatctatctatctatctat 480
|||||||||| ||| ||||||||||||||| ||| ||| ||| ||| ||| ||| |||||
Sbjct: 123 taaagtttctatctatctatctatctatctgtctgtctgtctgtctgtctgtctgtctat 64
Query: 481 ctatctatctatctatctatctg 503
|||||| ||||||||||||||||
Sbjct: 63 ctatctgtctatctatctatctg 41
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
