BAC Information

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BAC

Clone NameMSMg01-104E02
Chromosome4 (Build37)
Map Location 78,921,846 - 78,922,031
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040026, LOC100040036
Downstream geneLOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104E02.T7 (MSMg01no104_e02.b1)MSMg01-104E02.TJ (MSMg01no104_e02.g1)
ACCAG318913AG318914
length690702
length of high quality
(start - end)
188 (120 - 307)343 (78 - 420)
definitionCHROMAT_FILE: MSMg01no104_e02.b1 PHD_FILE: MSMg01no104_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:27 2005CHROMAT_FILE: MSMg01no104_e02.g1 PHD_FILE: MSMg01no104_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCAAATTTGCGGCGCTATCGACTCCTAATCCAAGCTGCGCGGATTCN
CTTGATGGCGCACCGAGGACCTCAGAAGGAGGGACTCAGCGGATTGCATT
TAATATTTGCCCGTTTCAAGTATTAGTGATAGAAAAAGTGGTATCAAGTT
GAGAGTTCAGAAAGAAATATGGGAAGAATTCCAGTTCCAGGAGCTGGGAC
GGTCTGGAGGGGAAGAAAGGGTATAGGGGGCAATGATATTTTTCTAGTGA
AAACATAGAACAAAATATTTAAAAACAGAGAGGGACTACATTTGGGATTT
AAATTTTTGTTTTTTTTAAATACAGCACTGCTCCCACATTTTTCTCTGAT
ATAGACCCCTCACTTATTTTACTTACTTCAAGCAAAATGATTCAGAAATT
CACCTTCTCACAGTTCCTAGAGGTAGTAAAAAGTTCTTATACTTTATAAT
ATTTTCTAGGAAGAATTCTTTCCTCTCAAGGATCTAGACATTATTTCTGG
GCCAACATTGTTTCAGTCTTACTGCGCATCTTTTTATTATTCTCTCACAT
TTATTTTCTACATTTTTCCACCCCTCAGTATCTATTGGTACCTTACCAGA
TATACGTTGTCTTTTGACTTTTTCAGGGATTTCCCTTATATGCCCTATTG
TTCTTATTTTAAGTAAAAACTGAGTTTGCCTTCTCTTATA
CTTCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAAGCCCAGCTCTAAGGTTCCACA
GGGGATTGATATTAAGAACAGGGCAAGAAGCCATTCTCATCATATTTTGG
GAAAAAATGTGCATGCTTTCTACTCTACGCTAAGATTATGCCTGAGGCTC
AGTTGGAAAATAATGGACTAATTTTCATTGCACAGTTGACTTTTTAAGAC
AGAACAATAGATACTCTGTTGTGTAGTTACATGTTACCACTACTATGCAT
TTCTATAATATAAAAGAATAAATACAATACATAAAGAGAAAAAAGCATCG
AGAAATTTAATTTAATTTTGGAGCTAAGGCTTGTGCTATAAGAAATAAGA
TAAATAAAGGTTTGATCTACAATAGAATAAAGAGAAGGAGGTGTGCTCAG
GGTAAACAGTGCACAGAAAAATCTGCAACTTCTAAAACTTACACGTGTGA
GAAATTCTCTGCTCTGGGAATGCAACAAACACAATAATTTAAACAAGAAT
ACACATAAGTAAGTCTATTAATTAAATAATTAATGAATGAAATGGTTCTG
CAGTTTAATTCCGTGAATACAAGATGATAGTCAATTTGATATTTATCTAC
CTAGGTCTGTTCTTACTGCCTCGCAAGTTCCATGAGTCCAGAAATTGTAA
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_e02.b1 MSMg01no104_e02.b1 CHROMAT_FILE:
MSMg01no104_e02.b1 PHD_FILE: MSMg01no104_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:27 2005
         (188 letters)



>mm_chr4_78921646_78922234
          Length = 589

 Score =  313 bits (162), Expect = 3e-90
 Identities = 180/186 (96%), Gaps = 1/186 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtattagtgatagaaaaagt-ggtatcaagttgagagttcagaaagaaatatgggaagaa 59
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtattagtgatagaaaaagtgggtatcaagttgagagttcagaaagaaatatgggaagaa 327

                                                                       
Query: 60  ttccagttccaggagctgggacggtctggaggggaagaaagggtatagggggcaatgata 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttccagttccaggagctgggacggtctggaggggaagaaagggtatagggggcaatgata 267

                                                                       
Query: 120 tttttctagtgaaaacatagaacaaaatatttaaaaacagagagggactacatttgggat 179
           |  ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 266 taattcaagtgaaaacatagaacaaaatatttaaaaacagagagggacaacaattgggat 207

                 
Query: 180 ttaaat 185
           ||||||
Sbjct: 206 ttaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 589
Length adjustment: 8
Effective length of query: 180
Effective length of database: 581
Effective search space:   104580
Effective search space used:   104580
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)