BAC Information

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BAC

Clone NameMSMg01-104E21
Chromosome4 (Build37)
Map Location 101,009,006 - 101,067,982
singlet/doubletdoublet
Overlap geneE130102H24Rik
Upstream geneRor1, Ube2u, LOC277707, LOC621573, Cachd1, LOC100039747, Raver2, Jak1
Downstream geneAk3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739, Pde4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104E21.T7 (MSMg01no104_e21.b1)MSMg01-104E21.TJ (MSMg01no104_e21.g1)
ACCAG318950AG318951
length709719
length of high quality
(start - end)		568 (44 - 611)632 (72 - 703)
definitionCHROMAT_FILE: MSMg01no104_e21.b1 PHD_FILE: MSMg01no104_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:31 2005CHROMAT_FILE: MSMg01no104_e21.g1 PHD_FILE: MSMg01no104_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,009,006 - 101,009,566)(101,067,351 - 101,067,982)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCGGA
ATTCAGAACTGTTGTACAAACCTCACCCTTCAAAAGAACTGCAGGAAAAT
TCCAGCTTACCTTGAGGTTCAAAAGTGCCAAGAGCCTCTGGGGAGCTCAC
ACTTTGTGTACAGTGAGTCTTTTGACTGGCCAAGGGACTCTCCTTTGGGA
TGCTATCGATATCTGCCTCAGTCCTGGATACACAGAGTTAGCTCTGTTGA
AGGACGACAGTCCACACCCAGGCTGCAGGTTGCTCTTCTGTGAACAGTGG
AGGAAAGCCTCCATCCCAAGCCACCTTCCATAACTCACTAGAGGCCACAT
GCCCATAGAACCTAACATCCTCACTCTGCCAAATAGTGCCTTCCTCCTCC
TTGTTTCCCAGACCCTGGCTAACAAGTACTCCTTTTTAGGACAGTGGCTC
CCCGGTTTTCAGATAACAATATCCAAACTGAATGTTCTCTGAGAGCAGTT
CTCCCAGCGACATTACCCTGGCCTTTGGCAGGGGTGACAGGAGCAACTGG
AGAGCTGCCTCTGCTGGGACCCAAGTCCTTTGACACATCTGTAGGAAAAT
GCTGGCTTGTGGCCAGACCCACTCTTGGGCTCTGAGAAGCTGGGATGACA
AGAACCTTGTTATCTCTCTTTACCCATTCTCAGAAAACAAGGAAGATTTC
TCCAGAGCC

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAGCCCTGGCATAGAGTATGCACTTGAA
GCATTTGCTGATGTGTAATTAGGTCTTGTAGATGAAGGTTTAGTAGAGAA
CAGAGCAGGGCTCTCCCCTTCCCACTCAGGATGCTTTCAAAGTTGACCAA
TGCAATCTTGCTCAGTGATAGATTTCTTGACGATAAATGCTCATAGCTGT
ATCAGCAAGCTTTGGGTTTTGAGAGACTGTTGCAGTACAGTGGAAAATGA
CAGAGATGACGATTGCAGACGTCAACCTCAGGCCTCAATGTGCTCGAGCG
CTTAGGTGCTAAACAAGCAACAAAACAAAAAGCCATGCATATGTGCATTC
TTACACATGACACAACACATGCATATGAAAATGGGGGAGGGGAAACATCG
TGGCCCATAGACAGGCAGATCCTCCTGGTCCTGGTGGTGAAAAGGGGACA
TTTCCATCTTTACACTGCAGAGGCAAGTACGCACAGTAGGATGAGCATGC
TCTTTGGCCAGGATGTACCAAGGCAAGAATCTCAGCTCTACCACTCTACT
CTGGCTGTGTAGACTTGCACCAGGCACCTCTCTCCCTACTTTCATTGTCA
GTATCTGTAAAGTAGGGATAAAAACACCATTGTCCCTGGGATACTTTGAG
GTTTCAAAGAGATAGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_e21.b1 MSMg01no104_e21.b1 CHROMAT_FILE:
MSMg01no104_e21.b1 PHD_FILE: MSMg01no104_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:31 2005
         (568 letters)



>mm_chr4_101008801_101009768
          Length = 968

 Score = 1015 bits (525), Expect = 0.0
 Identities = 552/561 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcagaactgttgtacaaacctcacccttcaaaagaactgcaggaaaattccagctt 65
           |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 206 gaattcagaactgttgcagaaacctcacccttcaaaagaactgcaggaaaatgccagctt 265

                                                                       
Query: 66  accttgaggttcaaaagtgccaagagcctctggggagctcacactttgtgtacagtgagt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 accttgaggttcaaaagtgccaagagcctctggggagctcacactttgtgtacagtgagt 325

                                                                       
Query: 126 cttttgactggccaagggactctcctttgggatgctatcgatatctgcctcagtcctgga 185
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 326 cttttgactggccaagggactctcctttgggatgccatccatatctgcctcagtcctgga 385

                                                                       
Query: 186 tacacagagttagctctgttgaaggacgacagtccacacccaggctgcaggttgctcttc 245
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 386 tacacagagttagctctgttgaaggatgacagtccacacccaggctgcaggttgctcttc 445

                                                                       
Query: 246 tgtgaacagtggaggaaagcctccatcccaagccaccttccataactcactagaggccac 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtgaacagtggaggaaagcctccatcccaagccaccttccataactcactagaggccac 505

                                                                       
Query: 306 atgcccatagaacctaacatcctcactctgccaaatagtgccttcctcctccttgtttcc 365
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atgcccatagaacctgacatcctcactctgccaaatagtgccttcctcctccttgtttcc 565

                                                                       
Query: 366 cagaccctggctaacaagtactcctttttaggacagtggctccccggttttcagataaca 425
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cagaccctggctaagaagtactcctttttaggacagtggctccccggttttcagataaca 625

                                                                       
Query: 426 atatccaaactgaatgttctctgagagcagttctcccagcgacattaccctggcctttgg 485
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 626 atatccaaactgaatgttctctgagagcagttctcccagtgacattaccctggcctttgg 685

                                                                       
Query: 486 caggggtgacaggagcaactggagagctgcctctgctgggacccaagtcctttgacacat 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 caggggtgacaggagcaactggagagctgcctctgctgggacccaagtcctttgacacat 745

                                
Query: 546 ctgtaggaaaatgctggcttg 566
           |||||||||||||||||||||
Sbjct: 746 ctgtaggaaaatgctggcttg 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no104_e21.g1 MSMg01no104_e21.g1 CHROMAT_FILE:
MSMg01no104_e21.g1 PHD_FILE: MSMg01no104_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:31 2005
         (632 letters)



>mm_chr4_101067071_101068102
          Length = 1032

 Score = 1114 bits (576), Expect = 0.0
 Identities = 618/632 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagccctggcatagagtatgcacttgaagcatttgctgatgtgtaattaggtcttgtag 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 912 ttagccctggcatagagtatacacttgaagcatttgctgatgtgtaattaggtcttgtag 853

                                                                       
Query: 61  atgaaggtttagtagagaacagagcagggctctccccttcccactcaggatgctttcaaa 120
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 852 atgaaggtttagtagagaacagagcagggctctcccctccccactcaggatgctttcaga 793

                                                                       
Query: 121 gttgaccaatgcaatcttgctcagtgatagatttcttgacgataaatgctcatagctgta 180
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 792 gttgaccaatgcaatcttgctcagtgatagatttcttgacgataaacgctcacagctgta 733

                                                                       
Query: 181 tcagcaagctttgggttttgagagactgttgcagtacagtggaaaatgacagagatgacg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 732 tcagcaagctttgggttttgagagactgtcgcagtacagtggaaaatgacagagatgacg 673

                                                                       
Query: 241 attgcagacgtcaacctcaggcctcaatgtgctcgagcgcttaggtgctaaacaagcaac 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 actgcagacgtcaacctcaggcctcaatgtgctcgagcgcttaggtgctaaacaagcaac 613

                                                                       
Query: 301 aaaacaaaaagccatgcatatgtgcattcttacacatgacacaacacatgcatatgaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aaaacaaaaagccatgcatatgtgcattcttacacatgacacaacacatgcatatgaaaa 553

                                                                       
Query: 361 tgggggaggggaaacatcgtggcccatagacaggcagatcctcctggtcctggtggtgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgggggaggggaaacatcgtggcccatagacaggcagatcctcctggtcctggtggtgaa 493

                                                                       
Query: 421 aaggggacatttccatctttacactgcagaggcaagtacgcacagtaggatgagcatgct 480
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||  ||||
Sbjct: 492 aaggggacgtttccatctttacactgcagaggcaagtacgcacagcaggatgagtgtgct 433

                                                                       
Query: 481 ctttggccaggatgtaccaaggcaagaatctcagctctaccactctactctggctgtgta 540
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 432 ctttggccaggatgtaccagggcaagaatctcagctctaccactttactctggctgtgta 373

                                                                       
Query: 541 gacttgcaccaggcacctctctccctactttcattgtcagtatctgtaaagtagggataa 600
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 372 gacttgcaccaggcacctctctccttactttcattgtcagtatctgtaaagtagggataa 313

                                           
Query: 601 aaacaccattgtccctgggatactttgaggtt 632
           ||||||||||||||||||||||||||||||||
Sbjct: 312 aaacaccattgtccctgggatactttgaggtt 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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