BAC Information

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BAC

Clone NameMSMg01-104G15
Chromosome4 (Build37)
Map Location 154,414,990 - 154,415,457
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2
Downstream genePex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104G15.T7 (MSMg01no104_g15.b1)MSMg01-104G15.TJ (MSMg01no104_g15.g1)
ACCAG319033AG319034
length713706
length of high quality
(start - end)
---467 (74 - 540)
definitionCHROMAT_FILE: MSMg01no104_g15.b1 PHD_FILE: MSMg01no104_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:40 2005CHROMAT_FILE: MSMg01no104_g15.g1 PHD_FILE: MSMg01no104_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCG
GAATTCCAGGACAGTTCCGGATACACAGAGAAGTCCTGACTCAAACAAAC
AAACAAACAAACAAAACATACATACACACACACACACATATACACACTAC
ACACATACGCACTCATACATATACACTATATACACATATTTACCACTTAT
ACACACTTATATATTCACACACTCCACACTTACACTCATTCACACACATA
CACATTTAGAGTAAGCTCCTCAAGAGCAGTTCTAGGATAGCCTGACTAGA
GTCCATGTCTCAACACATTTTCTCCAAAGTAGCTAAAGTTACGCCACCAT
AAGCTCATCACTGCGTTAGTATCCCTTAAGAGTACATATGACCATAGGTA
TGGGAGAGTTTAGTCCTGGAGCTCTGCCTTACCCTGTATGATAGCCCGTG
CTGAGTTCTCAACATGAGCTTTTAGTAAATTGTATAAAAACCAATACCTC
GCCTTTGTACCATGTCCGACTATTATTATCTCCTATTTCTGGTCATTTTT
GTTAGTAATACAGCTCTTTCCCCATTTATTATGTACTTTACAAATATTTT
ACCCATTTCGCCTTGCTCCGTCTTGCCTTGTTTCGTCTCGCTTAGCCTTG
CCTCGTACCGCCTGTTTTCTAACGAAGGTGTAACTCTGAGTAACCTTGGA
TGTTTTGACAATT
CATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTCCTTGCTGCTTAGGCTAGGCCTG
TGGGTCCTGGGACTCCTGCAGGTCTTGCTCCTTACAAGTGAGAGAGGCCT
CCTGCAGGCCCTCCTAGGGATAGGAAGCCCTGGTGCCTGGGGTTCTCAGC
ACCACCACCAGTAGTTCAGGTTACATAATCCCCCACCCCACACTTGGCTT
GCTGTAATCGGCAGCAGCCAGGTTCGACAATATGAGTTGTAATTGGATTT
TAATTTTTAATGCCTGCAATATATGAAGAGCTACGGGCCAATTTGTATAG
ACTCAGTTACTCTGCACCTAACAGGACTACTTCATTATCTGCCAAGCATT
GCACCCGCCCTGCCTCCTGCTCCTGGGAGGGAGGGGTAGTGAGCCTGGCC
CAGAGTTTGTGCCAGTAACCTGAAGGCTGCCTGCCACCTGCTGCAGTGGA
GGAGCTGCAGAGGGAACGGGCCACCTCCCGTACCTCAGAGTGGGCTGGAG
ACCAGTGCTGCCTACCCCTCCTCCTGTACCACTGCAGCTCCCAGTGTAGC
TTTCTGGGCTCTGTCTGCCCTTGGCTGCCGGGTTGTCCTCTAGGGTCCAG
GTCTCACTATGTCCAGCCAAAACTGCAGCTGCCATCTCTTGGTCAGGACT
TTTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_g15.g1 MSMg01no104_g15.g1 CHROMAT_FILE:
MSMg01no104_g15.g1 PHD_FILE: MSMg01no104_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:40 2005
         (467 letters)



>mm_chr4_154414790_154415657
          Length = 868

 Score =  851 bits (440), Expect = 0.0
 Identities = 461/468 (98%), Gaps = 1/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctccttgctgcttaggctaggcctgtgggtcctgggactcctgcaggtcttgctcctt 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 668 tcctccttgctgcttaggctaggcctctgggtcctgggactcctgcaggtcttgctcctt 609

                                                                       
Query: 61  acaagtgagagaggcctcctgcaggccctcctagggataggaagccctggtgcctggggt 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 608 acaagtgagagaggcctcctgcaggccctcccagggataggaagccctggtgcctggggt 549

                                                                       
Query: 121 tctcagcaccaccaccagtagttcaggttac-ataatcccccaccccacacttggcttgc 179
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 548 tctcagcaccaccaccagtagttcaggttacaataatcccccaccccacactcggcttgc 489

                                                                       
Query: 180 tgtaatcggcagcagccaggttcgacaatatgagttgtaattggattttaatttttaatg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgtaatcggcagcagccaggttcgacaatatgagttgtaattggattttaatttttaatg 429

                                                                       
Query: 240 cctgcaatatatgaagagctacgggccaatttgtatagactcagttactctgcacctaac 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cctgcaatagatgaagagctacgggccaatttgtatagactcagttactctgcacctaac 369

                                                                       
Query: 300 aggactacttcattatctgccaagcattgcacccgccctgcctcctgctcctgggaggga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 368 aggactacttcattatctgccaagcattgcacccgccctgcctcctgctcccgggaggga 309

                                                                       
Query: 360 ggggtagtgagcctggcccagagtttgtgccagtaacctgaaggctgcctgccacctgct 419
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggggtagtgagcctggtccagagtttgtgccagtaacctgaaggctgcctgccacctgct 249

                                                           
Query: 420 gcagtggaggagctgcagagggaacgggccacctcccgtacctcagag 467
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gcagtggaggagctgcagagggaacgggccacctcccgtacctcagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space:   392106
Effective search space used:   392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)