BAC Information

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BAC

Clone NameMSMg01-104K18
Chromosome4 (Build37)
Map Location 54,920,349 - 55,057,721
singlet/doubletdoublet
Overlap geneEG666920, Zfp462
Upstream geneLOC100041280, LOC666901, LOC100041303, LOC384018
Downstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104K18.T7 (MSMg01no104_k18.b1)MSMg01-104K18.TJ (MSMg01no104_k18.g1)
ACCAG319224AG319225
length724741
length of high quality
(start - end)
421 (63 - 483)169 (123 - 291)
definitionCHROMAT_FILE: MSMg01no104_k18.b1 PHD_FILE: MSMg01no104_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:00 2005CHROMAT_FILE: MSMg01no104_k18.g1 PHD_FILE: MSMg01no104_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,057,301 - 55,057,721)(54,920,349 - 54,920,517)
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGATCCGCGGAATTCT
GTTGCCTTCCCAAAGAATCACAATGCTCCTTTGGGATGATGACATCAGTC
TTTCATCTACAGCTGGGTCCAGGGGATGCCTCCAACCACTCAGTATACTA
GAAACCAGCTACCTCAAATTCTTCCTCCTGCATTTTGAACGTCAGTGGAC
GGCTCCTGCTTTCGTTCACACTGGAGGTGTAACCATGCACTAGACAAAAG
TCTCATGGTCTACCATCAGCACTGCTTCCTCTCTATCCCATGCCTTCTCA
CTCACAGATCTCTTGGGTCTTTATATTCTACAAGTACTCCCTGTTCCGAT
TCCCTCCAAGACCTAGTCATGTATGTCATTGATGCTGGTCCTTGGTCAGG
CCAAGTTACTCGGTGCTCTGCAATTCCACCCAGCGTTCCAAACTCTGTTG
GGAGTCACCTCCTTTGTGAAATCCAAATGAGACAATGGTCCATCTCCAAT
CCAGATGGACTTTCTGTTCAACTCTTCCCGACAACACCTACACATCTACA
GTTTCTCTTCAGGACCACATTGCACCCTGTATTACATTAATCCCTCTTAA
GCAGCAGCATACTTGTGAAGATCTAGGCCTACAAAACCTGCTATTGCCCC
TCTTTATGCAGGTATTTCCTCCACTTGAGGTCTCTGACTCTCATATGATC
CCAGCTTGTTTCCACGTTGACATA
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTACTGTTTTTAAAACAACAGATAAAATGTT
TTTTCTCCTATAGATAACCCCGAGCAACTCAGACTTGGTTGTAGTATGGT
CATTTCTTTTATTCTGTCTGTGACCCTCACAGAGGGCTCAGTATCACCAT
GTTGGCTCAGAGCATCTGGGGAGTCCAACCATCTGAGGTCCATCACAGCT
ATGGATGAGTGGGCCAGGAAATATCTGCCTTTTCCACTGGCAAATATGAT
GAAGTTACTGGTCATGATGTTTTTGTAATTTGCTTGCATTTGTTGTAGCT
GTTGTTGTTGTAGTAGTAGTTGTTGTTGTTTTCTCTCATTCTTTCCCTTT
TTCTCTTCTTCCCCCTTTTCTCTTTATTCCATTGTTTCTCTTTTTTCTCT
CTCTCCTTTTTTTTTTTTTTTTTTTTTCCTTTTCCTCTATCCTTCCCCTT
TTTTCTTTTTTCGCTTCCCTTTTTCTTATTTATCTTTCTCTTTTTTTTAT
TTTCCTTTTCTTTTTTCTCTCCCCTTTTTTTCTATCCGTACTCTATGTCC
TTTTCTCTTACCTTTTTTGTACTTCTCTTTCCCTCCCCCTCTCCTCCCTC
TTTTTTTTTCCCTTTTATTTTCCCCTTTCTCCTCCTTTATTTCTTTTTTT
TCCTCCCCCTCTCCGTTTTTTTTCCCTTATTTTTTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_k18.b1 MSMg01no104_k18.b1 CHROMAT_FILE:
MSMg01no104_k18.b1 PHD_FILE: MSMg01no104_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:00 2005
         (421 letters)



>mm_chr4_55057101_55057921
          Length = 821

 Score =  799 bits (413), Expect = 0.0
 Identities = 419/421 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaatcacaatgctcctttgggatgatgacatcagtctttcatctacagctgggtccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaatcacaatgctcctttgggatgatgacatcagtctttcatctacagctgggtccag 562

                                                                       
Query: 61  gggatgcctccaaccactcagtatactagaaaccagctacctcaaattcttcctcctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggatgcctccaaccactcagtatactagaaaccagctacctcaaattcttcctcctgca 502

                                                                       
Query: 121 ttttgaacgtcagtggacggctcctgctttcgttcacactggaggtgtaaccatgcacta 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 ttttgaacgtcagtggacggctcctgctttctttcacactggaggtgtaaccatgcacta 442

                                                                       
Query: 181 gacaaaagtctcatggtctaccatcagcactgcttcctctctatcccatgccttctcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacaaaagtctcatggtctaccatcagcactgcttcctctctatcccatgccttctcact 382

                                                                       
Query: 241 cacagatctcttgggtctttatattctacaagtactccctgttccgattccctccaagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagatctcttgggtctttatattctacaagtactccctgttccgattccctccaagac 322

                                                                       
Query: 301 ctagtcatgtatgtcattgatgctggtccttggtcaggccaagttactcggtgctctgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ctagtcatgtatgtcattgatgctggtccttggtcaggccaagttactcggtgttctgca 262

                                                                       
Query: 361 attccacccagcgttccaaactctgttgggagtcacctcctttgtgaaatccaaatgaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccacccagcgttccaaactctgttgggagtcacctcctttgtgaaatccaaatgaga 202

            
Query: 421 c 421
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no104_k18.g1 MSMg01no104_k18.g1 CHROMAT_FILE:
MSMg01no104_k18.g1 PHD_FILE: MSMg01no104_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:01 2005
         (169 letters)



>mm_chr4_54920149_54920717
          Length = 569

 Score =  319 bits (165), Expect = 5e-92
 Identities = 168/169 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaactcagacttggttgtagtatggtcatttcttttattctgtctgtgaccctcacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaactcagacttggttgtagtatggtcatttcttttattctgtctgtgaccctcacag 260

                                                                       
Query: 61  agggctcagtatcaccatgttggctcagagcatctggggagtccaaccatctgaggtcca 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggctcagtagcaccatgttggctcagagcatctggggagtccaaccatctgaggtcca 320

                                                            
Query: 121 tcacagctatggatgagtgggccaggaaatatctgccttttccactggc 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacagctatggatgagtgggccaggaaatatctgccttttccactggc 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)