BAC Information

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BAC

Clone NameMSMg01-104K23
Chromosome4 (Build37)
Map Location 9,202,053 - 9,202,624
singlet/doubletsinglet
Overlap gene4933402J24Rik
Upstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584
Downstream geneAsph, Gdf6, 4930448K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104K23.T7 (MSMg01no104_k23.b1)MSMg01-104K23.TJ (MSMg01no104_k23.g1)
ACCAG319234AG319235
length765723
length of high quality
(start - end)
69 (45 - 113)573 (74 - 646)
definitionCHROMAT_FILE: MSMg01no104_k23.b1 PHD_FILE: MSMg01no104_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:01 2005CHROMAT_FILE: MSMg01no104_k23.g1 PHD_FILE: MSMg01no104_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATCCGCGGAATT
CCTCCCCCCCCCTTCCCTCCTCCCCCATTCCTTCTTTCTCCTTTTCCTTC
CCTTTTCTGAAGATGATCCCACTACCTTGCCCATAGTGATTGCACATGTG
ATGCCTGCTTTTGATAGCAATTCGAATGTATATGGTATTTTACCCCTTCT
TTCCCCCTTCTCCCTCCCCCCCCCCCCCACCCTTTCCCTCCCTCCTCCCC
CTATCCACTTCCCCCCCATATCCTCCCCTCTTTACATCATCCCCTCTTCC
TTATCCCTTCTCCTACATCTTTTTTCCTCTCCCCTCCCCCCCCCCCTTCT
CTCCCCCCCCCCATTCCCTTTCCCTTCCTCCCCTCCCCCCTCCCTCTATC
CTCCCCCCCTTCCCTCTACCTATTCCCCTTCTCCCCCCCCTTCTTCCTAT
TCTTCCTTCCATTCCCCCCTTCCCTCCCTCCCCCCCTTTCCCCTTTCTCC
ATTTCCCCCCCCTCCCCCTCCCTTCCACCTTTTCCCCTTTTCCCCCCTTA
CCTCTTCCCTTTTCCTCCTCCCATCCCTCTTTCCCCTCACCCCCCCCTTC
CCCTATTATATTTCCTCCCCTCCCCTACCTCCTTCCCCTTTATCCCCCTT
ACCCCTTACCTTCCCTTCATTCCCTCCTTCCCTTACCCATATCCCCTTTA
CCTTCCCTTTCCTCCCACCCCTCCTTTTACCCTTCCCACCCCCCTTCCCC
TTCCTTCCCCCCTTT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTATCTGAAAGTTGGCAAAATTTGGTG
AAAGTCAGTGCACGCAGCAACATACTCAACCTCAGGGCTTTGGTCCCTTG
ATCTGCATAAAGGAAGAAGTTCCCACAAACCATACCAACCCCCCTGAAAA
CCCAACAACTGCAAAGAACCATTTCAAGAACTGACACATTCTGAATGTGT
AATTAACAACCCTGAGCTTGAAGTGTGGGTTCCAAACAATAAGAGAACAT
GGTAGCATTCTGGAAAGATCTCAGTTAGAATTGTCCAGGGGAAGAGGCTT
CGGTCAGTGTGATTGTAAACATCGGTCTAGATGGTCCAGGATCATCTACA
TTGACTTCACTTGGTATAAAAATTTCTTGCACTGAATGTGGTAATGCATA
TAATGTGAACAATCAAGAAGCCGAGGCAGGAGGATTGTGAACCCGAGACC
ATATGGGCTACATAGTAAAACCCCTTCAAAAAAAAAAAACCACAATAAAC
CACTAAAAGATAAAACTATCAAAGCAAACAAATTAAAAATCTCTTTGGCA
TCCCTTGGTGAATATATGTGCAATTTACATATTTGGAATGGAGTTTTAAA
CAAAATAGTTTTAAAATTTGTAAAAATGTTCTTTTGTCCTAGTGGATGAA
GTAGTGTATTAGAATTTAATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_k23.g1 MSMg01no104_k23.g1 CHROMAT_FILE:
MSMg01no104_k23.g1 PHD_FILE: MSMg01no104_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:02 2005
         (573 letters)



>mm_chr4_9201853_9202824
          Length = 972

 Score = 1011 bits (523), Expect = 0.0
 Identities = 561/575 (97%), Gaps = 5/575 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatctgaaagttggcaaaatttggtgaaagtcagtgcacgcagcaacatactcaacctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||
Sbjct: 201 ctatctgaaagttggcaaaatttggtgaaagtcagtgcacgcagcaacataggcaaactc 260

                                                                       
Query: 61  agggctttggtcccttgatctgcataaaggaagaagttcccacaaaccataccaaccccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggctttggtcccttgatctgcataaaggaagaagttcccacaaaccataccaaccccc 320

                                                                       
Query: 121 ctgaaaacccaacaactgcaaagaaccatttcaagaactgacacattctgaatgtgtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaaaacccaacaactgcaaagaaccatttcaagaactgacacattctgaatgtgtaat 380

                                                                       
Query: 181 taacaaccctgagcttgaagtgtgggttcca--aacaataagagaacatggtagcattct 238
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 381 taacaaccctgagcttgaagtgtgggttccactaacaataagagaacatggtagcattct 440

                                                                       
Query: 239 ggaaagatctcagttagaattgtccaggggaagaggcttcggtcagtgtgattgtaaaca 298
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ggaaagatctcagttagaattgtccaggggaagaggctttggtcagtgtgattgtaaaca 500

                                                                       
Query: 299 tcggtctagatggtccaggatcatctacattgacttcacttggtataaaaatttcttgca 358
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggtctagatggtccaggatcatctacattgacttcacttggtataaaaatttcttgca 560

                                                                       
Query: 359 ctgaatgtggtaatgcatataatgtgaacaatcaagaagccgaggcaggaggattgtgaa 418
           ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 561 ctgaatgtggtaatgcatataatgtgatcaatcaagaatccgaggcaggaggattgtgaa 620

                                                                       
Query: 419 cccgagaccatatgggctacatagtaaaaccccttcaaaaaaaaaaaaccacaataaacc 478
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 621 cccgagaccatatgggctacatagtaaaaccccttcaaaaaaaaaa--ccacaataaacc 678

                                                                       
Query: 479 actaaaagataaaactatcaaagcaaacaaattaaaaatctctttggcatcccttggtga 538
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 679 actaaaagataaaactatcaaagcaaacagattaaaaatctctttggcatcccttggt-a 737

                                              
Query: 539 atatatgtgcaatttacatatttggaatggagttt 573
           ||||||||||||||| |||||||||||||||||||
Sbjct: 738 atatatgtgcaattttcatatttggaatggagttt 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 972
Length adjustment: 10
Effective length of query: 563
Effective length of database: 962
Effective search space:   541606
Effective search space used:   541606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)