BAC Information

Click to search

BAC

Clone NameMSMg01-105A04
Chromosome4 (Build37)
Map Location 104,742,646 - 104,742,785
singlet/doubletsinglet
Overlap genePrkaa2
Upstream geneDab1, C8b, C8a, 1700024P16Rik
Downstream geneLOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105A04.T7 (MSMg01no105_a04.b1)MSMg01-105A04.TJ (MSMg01no105_a04.g1)
ACCAG319477AG319478
length706709
length of high quality
(start - end)
508 (48 - 555)335 (76 - 410)
definitionCHROMAT_FILE: MSMg01no105_a04.b1 PHD_FILE: MSMg01no105_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:29 2005CHROMAT_FILE: MSMg01no105_a04.g1 PHD_FILE: MSMg01no105_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:29 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGGAGTAATTACCTACCCTTGCTGCTCTTTCAGAGGAACTGAGT
TTGGTTCTCAGCACCTGCATCCAAATGCTCAAAGCCTTCAGTTTTATAGA
ATCCAATATCCTCTTCTGGCTTCCTTGGAAACTCACATACATGTGGCATA
TACAGAAATAGAAATAGAAATAGAAATGAAATAGAAATAGAAATATAGAA
AATGGAAATGGAAATAAAAATAAAAATAGAAATTGAAAACAGAAACAGTA
ATAGAGGTGGATAGACAGACAGACAGACAGACAGACAGACAGAATGTGAA
TACAGAAGTGTTGTGATACCCTAAAAGTTTATAACTGTGGTAACAACACA
CTTACAAATAATTTTAAAATGGATGAAAATATGGATACATAATATTAATA
ACAAACCAGTTTTACATTGTCTACATAGACATTAGCATTCTGTATGTCAA
GTGATTACAGTATAAATTGATACTAAATCCATGTATTCCTAATTGACACT
AAAAGTAAATATAAAGTAGTATATAATAAATGATGACTATAAAATTGGAA
TTAATCCCTTTTTTCATTCAGCTGTCAGTTCCTAAAGCCATTCCTGAGAA
TACGATACAGTACAGAGCTTGAACTTGCAAGGGTATGGTAAACCTACCCC
TTACTC
TCACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGGTGAGAAATCTCAAATGGCTA
AGAAGCACTTAAAGAAATGTTCAATGCCTTTAATCATCAGGGAAATGCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAACCTAAGATTCTACTCACACCAGT
CAGAATGGCTAAAATCAAAAGTTCAGGTGGCAGCAAATGCTGGTGAGGAT
GTGGAGAAACAGGAACACTCCTCCATTGCTGGTGGAATTGCAAGCTGGTA
CAACTAGTCACTCTGGAAATCAGTCTAGTTGTTCCTCAAAAAATTGGACA
TAGTACTACCTGAGGACCCAGCTATACCACTCCTGGGCATATACCCAAAA
GATGCTCCAATATAATAACAGGGACACATGCTTCACTATGTTCGTCGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCTCACGTCCTTCATCA
AAGGAATGGTCACAGAAAAAATGGTATATTTATACAATGTAGTAATATTC
ACCCTTTTAAAAAAACAGAATTATGGAAATTCCTTGGCCTAATAGAATGG
AACTATAAAAAAACCTTCTGAGAGTGAAGGTAACTTCTTCCTTAAAAAAA
ACACACCCGGGCGGGGATTTCTCCGAATAAACTCAATAATTAACCCATAA
AAGAACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_a04.b1 MSMg01no105_a04.b1 CHROMAT_FILE:
MSMg01no105_a04.b1 PHD_FILE: MSMg01no105_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:29 2005
         (508 letters)



>mm_chr4_104742078_104742985
          Length = 908

 Score =  255 bits (132), Expect = 4e-72
 Identities = 138/140 (98%)
 Strand = Plus / Plus

                                                                       
Query: 369 aaaatggatgaaaatatggatacataatattaataacaaaccagttttacattgtctaca 428
           |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 569 aaaagggatgaaaatatggatacataatattaataacaaaccacttttacattgtctaca 628

                                                                       
Query: 429 tagacattagcattctgtatgtcaagtgattacagtataaattgatactaaatccatgta 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tagacattagcattctgtatgtcaagtgattacagtataaattgatactaaatccatgta 688

                               
Query: 489 ttcctaattgacactaaaag 508
           ||||||||||||||||||||
Sbjct: 689 ttcctaattgacactaaaag 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)