Query= MSMg01no105_e06.b1 MSMg01no105_e06.b1 CHROMAT_FILE:
MSMg01no105_e06.b1 PHD_FILE: MSMg01no105_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:50 2005
(496 letters)
>mm_chr4_94407290_94408185
Length = 896
Score = 917 bits (474), Expect = 0.0
Identities = 489/494 (98%), Gaps = 4/494 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgacaacttttctcaacttatttgtaaaatgccataaaaaagtcacttaagga 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaattcatgacaacttttctaaacttatttgtaaaatgccataaaaaagtcacttaagga 637
Query: 65 gaaagactaagttaaaatagttctgtgtatgtgtgcgtgcacatacgtatgtgaacatac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gaaagactaagttaaaatagttctgtgtatgtgtgcgtgcacatacgtatgtgaacatac 577
Query: 125 tattagtttatttaacttaaaactaagtcagagcagaactagatacttggactttgtatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tattagtttatttaacttaaaactaagtcagagcagaactagatacttggactttgtatt 517
Query: 185 attatagtctctggtgtaaaatcagtcccatattctataacgctgatcagtgtgacttgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 attatagtctctggtgtaaaatcagtcccatattctataacgctgatcagtgtgacttgt 457
Query: 245 ggaaagcaagatgaaagtgaggaaccataattattatttaaaagtacatagtaacaaa-a 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 456 ggaaagcaagatgaaagtgaggaaccataattattatttaaaagtacatagtaacaaaga 397
Query: 304 ccatcaacctgtctctacattaatataaagacgaatccaaatttacagcaatatattatg 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 -catcaacctgtctctacattaatataaagacgaatccaaatttacagcaatatattatg 338
Query: 364 ctgttatgttaattataagtaagttactacataagtaattggcaccatcttagatactct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgttatgttaattataagtaagttactacataagtaattggcaccatcttagatactct 278
Query: 424 ttcagcaatttacattactcttaaatattattaaatttctgatatgttgcgt-gttgaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 277 ttcagcaatttacattactcttaaatattattaaatttctgatatgttg-gttgttgaaa 219
Query: 483 tcaaattgaaaagt 496
||||||||||||||
Sbjct: 218 tcaaattgaaaagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_e06.g1 MSMg01no105_e06.g1 CHROMAT_FILE:
MSMg01no105_e06.g1 PHD_FILE: MSMg01no105_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:51 2005
(340 letters)
>mm_chr4_94304119_94304858
Length = 740
Score = 603 bits (312), Expect = e-177
Identities = 333/340 (97%)
Strand = Plus / Plus
Query: 1 ttcctaacaaccactgtcaaatgcagtagtgattagtagggattattccaaatcactata 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 201 ttcctaacaaccactgtcaaatgcagtagtggttagtagggattattccaaatcactaca 260
Query: 61 tctgtgctttaaattgctacaaacttttgaggaaattttgcttttaagtttaggcagcat 120
||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 261 tctgtgctttaaagtgctacaaatttttgaggaaattttgtttttaagtttaggcagcat 320
Query: 121 attctttaattctgtgaattcatttgtgaacataagatcactttatatagttaaagctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctttaattctgtgaattcatttgtgaacataagatcactttatatagttaaagctgc 380
Query: 181 ctgttcctcactttgataatataagtctaaaatttgtatttctttattgattacaatttt 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgttcctcactttgataatataagcctaaaatttgtatttctttattgattacaatttt 440
Query: 241 agtataatttaagacatcacagcatgtgtattttttaatataacaatctgctcattttag 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 agtataatttaagacatcacagcatgtgtattttttaatataagaatctgctcattttag 500
Query: 301 ttgataaataattgtccttaggccttgtttttagcagtct 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgataaataattgtccttaggccttgtttttagcagtct 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
