BAC Information

Click to search

BAC

Clone NameMSMg01-105N11
Chromosome4 (Build37)
Map Location 111,327,238 - 111,327,474
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040381, 2310026E23Rik
Downstream geneSpata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105N11.T7 (MSMg01no105_n11.b1)MSMg01-105N11.TJ (MSMg01no105_n11.g1)
ACCAG320090AG320091
length709709
length of high quality
(start - end)
326 (57 - 382)238 (76 - 313)
definitionCHROMAT_FILE: MSMg01no105_n11.b1 PHD_FILE: MSMg01no105_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:36 2005CHROMAT_FILE: MSMg01no105_n11.g1 PHD_FILE: MSMg01no105_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGACGCGCATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCACCTGACCAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAAGCATCAGGCAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGAATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGTAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAATCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGCACTACTCAGCTATTACCAAGAATGAATTATTGACAT
TCCTAGCCAAATGGATGGACCTGGATGCCCTCTTCCTGACTGATGCATCA
CACCCACTAAGCAACTCCCACCCTATGTTCTCCCCGACAAGCGCATATTA
TCCCCCCACCTAGGTTTTCCACGATATAATAATTACTTTTGCTTACCTCC
GAACACTCG
TTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGGCATGGTGGTCTAGTGGGTTAT
ATGATGAACGAAGATAGAGGGGCTACAGGATTAGAAGAGGGAGAACTGCA
AAAGGATGTAGGAGGCAGCAAGAGGCAGGCTAAGAACACAACCAAGGGTC
AAGCTATAAACAGCCTTGTAAATTGTGTCAGAAATCTGTACATTGAAGGC
AACTGAAAGACACTGAAGGCTGGGCAGTGGTGACGCACACTTTTAATCCC
AGAACTTGGGAGGCACAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTG
GTCCACAGAATGAGTTCCAGGACAGCCAGTGCCACACAGAGAAACCCTGT
CTCATAAACATACAATAAACAAAAAAACTCACGTAAAAAATGAAAAAGAC
AATCAGAACACTAACCACATAGACCCTGGTACAGGCCCTTGTTCTTGCGA
AGATCATATGCCTCATCACAGGGAAACGTTATGTCTAGTAAACGTCCGTG
CTTTTACTTTGCCTATCACCGCGTGCCGAGCTTCCCCCTTTTCTCTTCTC
ATTTTTTCCCCTCCCCCCCCTTTTACACACTCCTCCTTTTCGTTTTCCTC
CTCCATCCCTTTCCCATCCCCCTCTCTCCCTATTCCCCCTTCCCCCCCCC
CTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_n11.g1 MSMg01no105_n11.g1 CHROMAT_FILE:
MSMg01no105_n11.g1 PHD_FILE: MSMg01no105_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:36 2005
         (238 letters)



>mm_chr4_111327037_111327674
          Length = 638

 Score =  389 bits (201), Expect = e-113
 Identities = 228/237 (96%)
 Strand = Plus / Plus

                                                                       
Query: 2   tggcatggtggtctagtgggttatatgatgaacgaagatagaggggctacaggattagaa 61
           |||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||||
Sbjct: 202 tggcatggtggtctagtgggttatatgacgaaccaagacggaggggctacaggattagaa 261

                                                                       
Query: 62  gagggagaactgcaaaaggatgtaggaggcagcaagaggcaggctaagaacacaaccaag 121
           |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaggaagaactgcaaaaggaggtaggaggcagcaagaggcaggctaagaacacaaccaag 321

                                                                       
Query: 122 ggtcaagctataaacagccttgtaaattgtgtcagaaatctgtacattgaaggcaactga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggtcaagctataaacagccttgtaaattgtgtcagaaatctgtacattgaaggcaactga 381

                                                                    
Query: 182 aagacactgaaggctgggcagtggtgacgcacacttttaatcccagaacttgggagg 238
           ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||
Sbjct: 382 aagacactgaaggctgggcagtggtggtgcacacctttaatcccagaacttgggagg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)