BAC Information

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BAC

Clone NameMSMg01-106H03
Chromosome4 (Build37)
Map Location 91,017,709 - 91,018,411
singlet/doubletsinglet
Overlap geneElavl2
Upstream geneLOC619842, LOC435792, Ppia-ps4_804.1, LOC664840, LOC664848, LOC100042274
Downstream geneLOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106H03.T7 (MSMg01no106_h03.b1)MSMg01-106H03.TJ (MSMg01no106_h03.g1)
ACCAG320530AG320531
length1,2571,273
length of high quality
(start - end)		684 (91 - 774)702 (79 - 780)
definitionCHROMAT_FILE: MSMg01no106_h03.b1 PHD_FILE: MSMg01no106_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:53 2005CHROMAT_FILE: MSMg01no106_h03.g1 PHD_FILE: MSMg01no106_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCAAAATTTGTNNNTACACTGGGCGCTNXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGAACATCTATGCCCCACCCGTTTAGAGCACCCACA
TTTATAGAACAAACTTTAGTAAAGCCACAGACACACATCTCATCCCACAC
AATAATAGTGGAAGATTTCTATAGCCCACTTTCACCAATGGAAACAGAAA
TTAAACAGAGACACAGTGAAACTAAGAGAGGTTATGAACCAAATGGATTT
AACAGATATCTACAGAATATTTTATCCTAAAACAAAAGAATACACCTTTT
TCTCAGCACCTCATGGTACCTTCTCCAAAATCGACCATATAATTGGTCAC
AAAATATCCCTCAACAGATATAAGAAGATTGAAATAATACCATGCATCCT
ATCAGATCACCATAGCCTAAGGCTGCTCTTCAAGAACAGCATAAACTACG
GAAAGCCCACACATATGTAGAAACTGAACAACTCTTTACTCAATGATATT
TTGGTCAGGGAAGAAATAAAGAAAGAAATTAAAGACTTCTTGTAATTTAA
TGAAAATATTGACATCATACCCAAACCTTTAGGACACAGTGAAGCACTGC
TAAGAAGAAAGTTCGTAGCTCTAAGTGCTCTGGTAAAGAACCTTGAGAGA
TCTTACACTAACAACTTAACAGCACACCTGAGAACTTTAGGACAAAAAGA
AGCAAACTCACCCAAGAGGAATAGAAAGCAGGAAATAGTCAAACTCAGGG
CAGATATCCCCCAAATAGCAACAAAGAAAACAATACAAAGAATCAACAAA
ACCAGAAGCTGGTTCATTGAGAGAAACAACAAGATAGATAAACCCCTAGC
CAAACTAACTAAAGGGCCCAGAGGCAGTATCCAAATTACCAAAATCAAAA
ATGAAAAGGGAGACATAACAACAGAAATGGGGGGAATTCCAAAAAAATTC
TCAGATCCTACTATAAAAGCCTATACTCAACAAAACTGGAAAGTCTGGAT
GAAATGGAAGGTTTTTTCTAGACCGAAACCCCTTACAAAGGTTAATTCCA
CACCAGGTAAACTTAGTTAAAACGGGCCCCTTATCGAACAAGGAAAATAA
AGATCTTTTTAAAATCCCCAACCCAAAAAAACCCCACTTTTCCCCATGGA
AATCCAAAAATTAAAGGGATATTTTGGGCGAAATCTTTCCAAACCTTTCC
AAAACCTGAAACCAAAATTCCCTCCAAAAATTCCCTGGAAATAAAGAGAG
AACGGAC

NNAAAATTTAATTTTTATTCATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTTTAAACACATAAACCTT
AGACTGCTAACTGTTGCTTCTCTGAACGACTAATAAACTAACTTGCACGC
AAAAATAAAAACTGACCAAATGGTCTCATCTTCTTTGATGAAGAAAAGAA
AAAGGCATTACATAGAGCCATCACAAAAGCTCTCATGCTACGCACACCGG
TTATAAAAATGCCGGGTGTTTTGTGGGTCTCTTGTAAGTGCAAATGACTA
GAAGAAGAACTTCTTCATATGTATTTGGTGAATCCAGTCATCCGCCAGGG
CTTTGTGGTACAAAGCCTTTCAGTACATTCCCTTCTCTTCTGCTTCCCTC
ACCCCAGCTACCCCACAGAACTCTCTTCCAGTCTGCTTCTGACACAAGAA
GGGTTGTGATGGTATACACTTTTAATCCCAGCATGTCTGGGGCAGAGGCA
GGAGGATCTCTGTGAGTTTGAAGTAAAGCTGGTCTACAGAGTTGAGTTCC
AGGCCAGACAGGACTGTATAGTGAGACCCTACCTAAAAAGTAAGGAAAAG
GGAGACAGGACTAGAGATGCCGCAGTAATTAGCAGCCCGGGCAGCTTTTC
AGAAGGACTCGGGTTTTATTTTCACCACATACAAGGAAGCTTACAACTGG
CTGTAATGTCAGTCCAAGTGGACACAACATCCTCTTCTGGCTTCCTTGGA
CACTACACCCATGTAATACACAGATAGACATTTTAATAAATCAATATGTA
TGTATATGTGTATGTGTATGTATAAAACATATACCAAATATATGTATGTA
CATATATATACACATATGTGTGTATATACATATGCGTAAACATATGTATG
TATGGATATAATTACCCACACACCCCCCCACTCATATATTTACCCCAAAC
ATAAAATCTCAAATTATAAATTACCCCATTTTTAAAAATCCAGGTTTTTA
AATATGTCCAAAAGAAAATCAAAATTTACCCCTGATCCAAACAACAAATC
GAATTTCCGTTTTACATAAAACCCTCTAAAAAAATAACTCTCCCTTCCCT
CCTAGGTCTCAAAAAATTTTTTTCCCCAAATTAATTCACACAACTTTTCT
CTTTAAAGGCTCTCTCCTCAATAAACTACCTCCCGTGGGGTCTAAAAACT
CAAATATTTCCTATATCATTCTCTTTCTCGTGTCTTTCTTTCTGACCTCT
TTTATATTATGTAATCACAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_h03.g1 MSMg01no106_h03.g1 CHROMAT_FILE:
MSMg01no106_h03.g1 PHD_FILE: MSMg01no106_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:53 2005
         (702 letters)



>mm_chr4_91017508_91018611
          Length = 1104

 Score = 1290 bits (667), Expect = 0.0
 Identities = 694/703 (98%), Gaps = 2/703 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tcctttaa-acacataaaccttagactgctaactgttgcttctctgaacgactaataaac 60
           |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 202 tcctttaacacacataaaccttagactgctaagtgttgcttttctgagcgactaataaac 261

                                                                       
Query: 61  taacttgcacgcaaaaataaaaactgaccaaatggtctcatcttctttgatgaagaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taacttgcacgcaaaaataaaaactgaccaaatggtctcatcttctttgatgaagaaaag 321

                                                                       
Query: 121 aaaaaggcattacatagagccatcacaaaagctctcatgctacgcacaccggttataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaaaaggcattacatagagccatcacaaaagctctcatgctacgcacaccggttataaaa 381

                                                                       
Query: 181 atgcc-gggtgttttgtgggtctcttgtaagtgcaaatgactagaagaagaacttcttca 239
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atgcccgggtgttttgtgggtctcttgtaagtgcaaatgactagaagaagaacttcttca 441

                                                                       
Query: 240 tatgtatttggtgaatccagtcatccgccagggctttgtggtacaaagcctttcagtaca 299
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 442 tatgtatttggtgaatccagtcatccgccagggctttgtggtacagagcctttcagtaca 501

                                                                       
Query: 300 ttcccttctcttctgcttccctcaccccagctaccccacagaactctcttccagtctgct 359
           ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttctcttctcttctgcttcccttaccccagctaccccacagaactctcttccagtctgct 561

                                                                       
Query: 360 tctgacacaagaagggttgtgatggtatacacttttaatcccagcatgtctggggcagag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tctgacacaagaagggttgtgatggtatacacttttaatcccagcatgtctggggcagag 621

                                                                       
Query: 420 gcaggaggatctctgtgagtttgaagtaaagctggtctacagagttgagttccaggccag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcaggaggatctctgtgagtttgaagtaaagctggtctacagagttgagttccaggccag 681

                                                                       
Query: 480 acaggactgtatagtgagaccctacctaaaaagtaaggaaaagggagacaggactagaga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acaggactgtatagtgagaccctacctaaaaagtaaggaaaagggagacaggactagaga 741

                                                                       
Query: 540 tgccgcagtaattagcagcccgggcagcttttcagaaggactcgggttttattttcacca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgccgcagtaattagcagcccgggcagcttttcagaaggactcgggttttattttcacca 801

                                                                       
Query: 600 catacaaggaagcttacaactggctgtaatgtcagtccaagtggacacaacatcctcttc 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 catacaaggaagcttacaactggctgtaatgtcagtccaagtggacacaacatcctcttc 861

                                                      
Query: 660 tggcttccttggacactacacccatgtaatacacagatagaca 702
           ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 862 tggcttccttggacactacacccatgtgatacacagatagaca 904


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1104
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1094
Effective search space:   757048
Effective search space used:   757048
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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