Query= MSMg01no106_l19.b1 MSMg01no106_l19.b1 CHROMAT_FILE:
MSMg01no106_l19.b1 PHD_FILE: MSMg01no106_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:36 2005
(766 letters)
>mm_chr4_15902426_15903591
Length = 1166
Score = 909 bits (470), Expect = 0.0
Identities = 473/474 (99%)
Strand = Plus / Minus
Query: 1 tgtgtatatacagctgagcattgaacagaaccagaggccagatgccacaaacgaggctag 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 474 tgtgtatatacagctgagcattgaacagaaacagaggccagatgccacaaacgaggctag 415
Query: 61 gatgcaagaagctcctgccacagggccagtggctattttcatgcttattgtttatacctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gatgcaagaagctcctgccacagggccagtggctattttcatgcttattgtttatacctt 355
Query: 121 aaatgactgacacatttggcccccaaccccataatatccacaacacaaaaggcaaacgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaatgactgacacatttggcccccaaccccataatatccacaacacaaaaggcaaacgct 295
Query: 181 acttctaaaaagttggagagatctgtaacagactgaagggatggcctctctgggaatgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acttctaaaaagttggagagatctgtaacagactgaagggatggcctctctgggaatgtg 235
Query: 241 gtgatatgtagcttagttttcttgttaaatggtgaagagtttatctttagcttctagtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gtgatatgtagcttagttttcttgttaaatggtgaagagtttatctttagcttctagtct 175
Query: 301 ttctaggggatttagaaatggtcataattggtacagggaggaaatatctagaattgattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ttctaggggatttagaaatggtcataattggtacagggaggaaatatctagaattgattg 115
Query: 361 tgtagccataatctcaattagtagaaatatttataattgttattaagttgaagtcataat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tgtagccataatctcaattagtagaaatatttataattgttattaagttgaagtcataat 55
Query: 421 ttcttattctggtacagcatttattttgatgtaaaatcaagggttttactggta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 ttcttattctggtacagcatttattttgatgtaaaatcaagggttttactggta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 766
Length of database: 1166
Length adjustment: 10
Effective length of query: 756
Effective length of database: 1156
Effective search space: 873936
Effective search space used: 873936
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no106_l19.g1 MSMg01no106_l19.g1 CHROMAT_FILE:
MSMg01no106_l19.g1 PHD_FILE: MSMg01no106_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:36 2005
(628 letters)
>mm_chr4_15843898_15844925
Length = 1028
Score = 1129 bits (584), Expect = 0.0
Identities = 617/628 (98%), Gaps = 1/628 (0%)
Strand = Plus / Plus
Query: 1 agaagccagcgccatcttataatggcaattgctcacggcacggctctccacagttgaaga 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agaagccagc-ccatcttataatggcaattgctcacggcacggctctccacagttgaaga 260
Query: 61 aaataggggatgaagaaatggcttggagcatgtgctgctcttgtggaggactccagttca 120
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 261 aaataggggatgaagaaatggctgggagcatgtgctgctcttgtggaagactccagttca 320
Query: 121 cccacatgggaggcaggtagctctcaatgacctgtaactcagctccggacccaatgccta 180
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 321 cccacatgggaggcaggtagctctcaatgacatgtaactcagctccggacccgatgccta 380
Query: 181 gcctgcgtcctccgtgcacccaaacacacgtgtgcagacacacatatatacataaaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctgcgtcctccgtgcacccaaacacacgtgtgcagacacacatatatacataaaataa 440
Query: 241 tgaagaaaaaacaaggaaggaaagagatgatgcaacctctacaagattatacaactgccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagaaaaaacaaggaaggaaagagatgatgcaacctctacaagattatacaactgccg 500
Query: 301 aaaagtttttaatgtcgaagatgtattgacacgtttaaagcagcagatggggatgagggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagtttttaatgtcgaagatgtattgacacgtttaaagcagcagatggggatgagggg 560
Query: 361 aaggaagcaaagccgtggggtagttgttggcactaaggatgtgcgggaaaagcatcttag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggaagcaaagccgtggggtagttgttggcactaaggatgtgcgggaaaagcatcttag 620
Query: 421 aacagtccagtggacaagagtgactctcaaaggccttgttccaaacccaaacgatggcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacagtccagtggacaagagtgactctcaaaggccttgttccaaacccaaacgatggcac 680
Query: 481 tgtggttgtgtttactgaacaacaaacatcatttatgacacaattaactgtcaatgtaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtggttgtgtttactgaacaacaaacatcatttatgacacaattaactgtcaatgtaca 740
Query: 541 gttactatacaggtcttacacctaacacacagatactgtaccttcttgcatagatctatt 600
||||| ||||||||||||||| ||||| ||||| ||| ||| ||||||||||||||||||
Sbjct: 741 gttaccatacaggtcttacacataacaaacagaaactctacattcttgcatagatctatt 800
Query: 601 catgaggtaataaaaactgcttcctgtt 628
||||||||||||||||||||||||||||
Sbjct: 801 catgaggtaataaaaactgcttcctgtt 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
