Query= MSMg01no106_n09.b1 MSMg01no106_n09.b1 CHROMAT_FILE:
MSMg01no106_n09.b1 PHD_FILE: MSMg01no106_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:50 2005
(614 letters)
>mm_chr4_120238906_120239921
Length = 1016
Score = 1164 bits (602), Expect = 0.0
Identities = 612/616 (99%), Gaps = 2/616 (0%)
Strand = Plus / Plus
Query: 1 aagagctagttctagggcagccaaggccacacaaaagaaagcctatctctctgggtgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagctagttctagggcagccaaggccacacaaaagaaagcctatctctctgggtgtgg 260
Query: 61 tggcacacacagcacttgggaggcagaggtaggtggatttctgagttcgaggccagcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcacacacagcacttgggaggcagaggtaggtggatttctgagttcgaggccagcctg 320
Query: 121 gtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaaat 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gtctacagagtgagttccaggacagccagggctacacagaaaaaccctgtctcaaaaaat 380
Query: 181 caaaaagaaaaagaaaaaatatttcaataacaaagtaaaatgctatcttccacccttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaaagaaaaagaaaaaatatttcaataacaaagtaaaatgctatcttccacccttctt 440
Query: 241 tatgggtgcaactttcactcacttcaaaatatcctcattatgaatattactcaactccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgggtgcaactttcactcacttcaaaatatcctcattatgaatattactcaactccag 500
Query: 301 taggaaaacaagaatcccaagcttacctactcttcaagtccagcatctacttgttgctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggaaaacaagaatcccaagcttacctactcttcaagtccagcatctacttgttgctac 560
Query: 361 aaaatggtcctgtttgaaggacacttgtcatgacaaggctaaaacccagtctcttacagc 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 aaaatggtcctgtttgaaggacacttgtcatgacaaggccaaaacccagtctcttacagc 620
Query: 421 ttctactcacccatgcaatttctacacattgggacacaaagcagcatattccatcttccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctactcacccatgcaatttctacacattgggacacaaagcagcatattccatcttccc 680
Query: 481 aaatgtttcatttttcaagggaataaaaacttttattcagctgccacccccccccc--at 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 aaatgtttcatttttcaagggaataaaaacttttattcagctgccaccccccccccccat 740
Query: 539 atttcacatgtattatagaaactcttgggtaatctattaagatagcagcttcctcttaat 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atttcacatgtattatagaaactcttgggtaatctattaagatagcagcttcctcttaat 800
Query: 599 ccaagagagaaaagca 614
||||||||||||||||
Sbjct: 801 ccaagagagaaaagca 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1016
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1006
Effective search space: 607624
Effective search space used: 607624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_n09.g1 MSMg01no106_n09.g1 CHROMAT_FILE:
MSMg01no106_n09.g1 PHD_FILE: MSMg01no106_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:50 2005
(278 letters)
>mm_chr4_120389935_120390612
Length = 678
Score = 514 bits (266), Expect = e-150
Identities = 275/278 (98%)
Strand = Plus / Minus
Query: 1 cttctgagctctgctggaacacttccttgggaccttaaaatggagcccagggccaaggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cttctgagctctgctggaacacttccttgggaccttaaaatggagcccagggccaaggcg 419
Query: 61 actgggtggctgagcctggggaaacactgagtctctatgttctcttgccagcccagaaaa 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agtgggtggctgagcctggggaaacactgagtctctatgttctcttgccagcccagaaaa 359
Query: 121 aaactgggaggcctcctcctcgctgagctccagtcacaccgaggtcctctggagagggct 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aacctgggaggcctcctcctcgctgagctccagtcacaccgaggtcctctggagagggct 299
Query: 181 tgggaggtgtcagctcagcatccctcagtcatgccctcccctctgccatctaaccttccg 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgggaggtgtcagctcagcgtccctcagtcatgccctcccctctgccatctaaccttccg 239
Query: 241 ggtcactctccaattgcagatttttgctagtcttcagc 278
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ggtcactctccaattgcagatttttgctagtcttcagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
