Query= MSMg01no106_o22.b1 MSMg01no106_o22.b1 CHROMAT_FILE:
MSMg01no106_o22.b1 PHD_FILE: MSMg01no106_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:03 2005
(521 letters)
>mm_chr4_14585889_14586809
Length = 921
Score = 1000 bits (517), Expect = 0.0
Identities = 520/521 (99%)
Strand = Plus / Plus
Query: 1 aggaaatttgtccaacagagggctaacacccaggaaagcgaacataacagactatagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaaatttgtccaacagagggctaacacccaggaaagcgaacataacagactatagaca 260
Query: 61 gaaaggatctttctttgccaatcacactatatcagaaaaattaggaataaaataatgaca 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaggatctttctttgccaatcatactatatcagaaaaattaggaataaaataatgaca 320
Query: 121 accatgagaaaacatattagcagcaagaagcaatatggagattaaggccctggggcctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accatgagaaaacatattagcagcaagaagcaatatggagattaaggccctggggcctgg 380
Query: 181 gactatgcctgtccaggattcacccatcacagtgatgcaaaatggtgggaatcttcagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactatgcctgtccaggattcacccatcacagtgatgcaaaatggtgggaatcttcagga 440
Query: 241 agctcactttcccactacagctccgactccatggcttctaccagctcctcctggcaaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctcactttcccactacagctccgactccatggcttctaccagctcctcctggcaaggt 500
Query: 301 ataatgcatcccaaaacatgtacaatgataaacactagccaagagatacaagagagaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataatgcatcccaaaacatgtacaatgataaacactagccaagagatacaagagagaggt 560
Query: 361 tcttggttttttgcagagaagagctattctgacttagtgcaaagcactccccaagcagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttggttttttgcagagaagagctattctgacttagtgcaaagcactccccaagcagct 620
Query: 421 agcagttctttgagagcccgtccacgttcaagtcaagataatgtcttccctatgggaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcagttctttgagagcccgtccacgttcaagtcaagataatgtcttccctatgggaggt 680
Query: 481 aacaatatatatttcttggaggtataattgctggcacaaaa 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaatatatatttcttggaggtataattgctggcacaaaa 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_o22.g1 MSMg01no106_o22.g1 CHROMAT_FILE:
MSMg01no106_o22.g1 PHD_FILE: MSMg01no106_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:03 2005
(532 letters)
>mm_chr4_14745880_14746811
Length = 932
Score = 801 bits (414), Expect = 0.0
Identities = 432/438 (98%), Gaps = 2/438 (0%)
Strand = Plus / Minus
Query: 1 agaccgggctcatcttgtactcacaaaga-tccccttctctgcctcccaagtcctggatt 59
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 437 agaccgggctcatcttgtactcacaaagattcacc-tctctgcctcccaagtcctggatt 379
Query: 60 taaaggcattgcacaagtaagtgtagggactggaccactgaatcttataagacagaactt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taaaggcattgcacaagtaagtgtagggactggaccactgaatcttataagacagaactt 319
Query: 120 ggtaatcagctagtcatgttgttcatgtttttaactagtccttacaaggacaggtgtggt 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 318 ggtaatcagctagtcatgttgttcatgtttttaactagttcttacaaggacaggtgtggt 259
Query: 180 tgcaaatgccattaatcccagcacttggaagtctgaggtaggaggttggagagtattggc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgcaaatgccattaatcccagcacttggaagtctgaggtaggaggttggagagtattggc 199
Query: 240 tagtctcagctaccatagcaaggcactgcttcaaataagcaaacaaattagcagattttc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tagtctcagctaccatagcaaggcactgcttcaaataagcaaacaaattagcagattttc 139
Query: 300 taagaagatatcccttgccccttcctagccgctcctttttcttctgtgaaacaagctctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 138 taagaagatatcccttgccccttcctagccgctcctttttcttctgtgaaacaagttctc 79
Query: 360 acattgcaggccaggctggactagaacactgcagcccaagctgtccttaggcctgcagat 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 78 acattgcaggccaggctggactagaacactgcaacccaagctgtccttaggcctgcagat 19
Query: 420 cctgtatctgcttcccag 437
||||||||||||||||||
Sbjct: 18 cctgtatctgcttcccag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
