Query= MSMg01no107_a09.b1 MSMg01no107_a09.b1 CHROMAT_FILE:
MSMg01no107_a09.b1 PHD_FILE: MSMg01no107_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:17 2005
(731 letters)
>mm_chr4_10291326_10292456
Length = 1131
Score = 615 bits (318), Expect = e-180
Identities = 330/334 (98%), Gaps = 1/334 (0%)
Strand = Plus / Minus
Query: 1 ctttaagaaatgcagaggaggtaattccttcatcctctcacacaagtgatctctgtggcc 60
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 334 ctttaagaaatgcagaggaggtaattccttcatcatcacacacaagtgatctctgtggcc 275
Query: 61 tttgcaggaaacagatgctcttgaggattgataaacatcatcgaggcctgaaggtttaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tttgcaggaaacagatgctcttgaggattgataaacatcatcgaggcctgaaggtttaaa 215
Query: 121 ttcccttccacataccacc-aaaaaaagtatgttgaaattctgcccccaaggtgatagtg 179
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttcccttccacataccaccaaaaaaaagtatgttgaaattctgcccccaaggtgatagtg 155
Query: 180 ttaggaaatggggccttcagaaggtaaaattaagccacaaagatggccctcccttgaatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 154 ttaggaaatggggccttcagaaggtaaaattaagccacaaagatggccctcccttgagtg 95
Query: 240 gagtgagttcccttactagaaacagactcctctcgagctccttaacctttgttctcccca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gagtgagttcccttactagaaacagactcctctcgagctccttaacctttgttctcccca 35
Query: 300 cacgagtctaacaggaagcctgcgacctacactc 333
||||||||||||||||||||||||||||||||||
Sbjct: 34 cacgagtctaacaggaagcctgcgacctacactc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 1131
Length adjustment: 10
Effective length of query: 721
Effective length of database: 1121
Effective search space: 808241
Effective search space used: 808241
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no107_a09.g1 MSMg01no107_a09.g1 CHROMAT_FILE:
MSMg01no107_a09.g1 PHD_FILE: MSMg01no107_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:17 2005
(752 letters)
>mm_chr4_10271106_10272257
Length = 1152
Score = 1353 bits (700), Expect = 0.0
Identities = 739/752 (98%)
Strand = Plus / Plus
Query: 1 tgtttggtataccaaggacaaagtggggaaagaacactaagaaaacagaaagaatatgaa 60
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 201 tgtttggtataccaaggacaaagtggggaaagaaaacgaagaaaacagaaagaatatgaa 260
Query: 61 gataacaggtcatgatgaggtttaagttactggaatgtgttcaggccttgtccggaactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gataacaggtcatgatgaggtttaagttactggaatgtgttcaggccttgtcctgaactc 320
Query: 121 agtggagagtcactaaggtatttcaagaagagaaattgagaaactagtttcattacgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 agtggagagtcactaaggtatttcaagaagagaaattgagaaactagtttcattatgaat 380
Query: 181 aacaacagcaataacaaaaaagggacaagactgaaaacaggaagatgtaatggacacaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaacagcaataacaaaaaagggacaagactgaaaacaggaagatgtaatggacacaaa 440
Query: 241 gcatggctaaaaattaatgcaatattatcagatgaattatgcaaataatagccaaccttt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatggctaaaaattaatgcaatattatcagatgaattatgcaaataatagccaaccttt 500
Query: 301 gcctgagttaactcacaagacctttgtgacaatatggtgaaggaacttagaccgacccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctgagttaactcacaagacctttgtgacaatatggtgaaggaacttagaccgacccca 560
Query: 361 ggagttaattaagttgcccaaagatttaacaaagtgacagagaagtaggtataaagtctt 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 ggagttaattaagttgcccaaagatttaagaaagtgacagagaagtaggtataaagtctt 620
Query: 421 accctaaggtttggatggaaccattatgctgtaatgtctttattttaatccaaagttaac 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 accctaaggtttggatggaaccattatgctgtaatgtctttattttcatccaaagttaac 680
Query: 481 gtagaaagctctggtaccccgggtagatacatgacttcatgtctaaatcaaccaagaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtagaaagctctggtaccccgggtagatacatgacttcatgtctaaatcaaccaagaaga 740
Query: 541 tatattagcttcatgaggaagacagagtaggactttgggtttttgtttctgatctcacta 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatataagcttcatgaggaagacagagtaggactttgggtttttgtttctgatctcacta 800
Query: 601 ggtccaactttcctgactaagtttctggagttctctggggtcacttcctcatctttatgg 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggtccaactttcctgactaaatttctggagttctctggggtcacttcctcatctttatgg 860
Query: 661 ggtaagtacataaactctacttcacaaagtgatggaaattaaattgtgagaaaacttcta 720
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 861 agtaagtacataaactctacttcacaaagtgatggaaattaaattgtgaaaaaacttcta 920
Query: 721 taaagattttgatacatgaaatgctcttaaaa 752
||||||||||| |||| |||||||||||||||
Sbjct: 921 taaagattttggtacacgaaatgctcttaaaa 952
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 752
Length of database: 1152
Length adjustment: 10
Effective length of query: 742
Effective length of database: 1142
Effective search space: 847364
Effective search space used: 847364
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
