Query= MSMg01no107_f17.b1 MSMg01no107_f17.b1 CHROMAT_FILE:
MSMg01no107_f17.b1 PHD_FILE: MSMg01no107_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:07 2005
(546 letters)
>mm_chr4_77415803_77416748
Length = 946
Score = 1004 bits (519), Expect = 0.0
Identities = 539/549 (98%), Gaps = 7/549 (1%)
Strand = Plus / Minus
Query: 1 gcttgaaaagaagctcagtgattaacatca---gccccttctttcataggacctcatttg 57
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 706 gcttgaaaagaagctcagtgattaacatcagttg----ttctttcataggacctcatttg 651
Query: 58 attcttgacacatataggcttacaaccatccataacttcactttcacgggatcctgcact 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 attcttgacacatataggcttacaaccatccataacttcactttcacgggatcctgcact 591
Query: 118 ctcttctgatctccctttgaacctagagtacatattaaatgcaaacatacagtgcacatt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctcttctgatctccctttgaacctagagtacatattaaatgcaaacatacagtgcacatt 531
Query: 178 tgcagataaaatctgatagataaatgaatatactatactaaacaaaatatattcgattta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgcagataaaatctgatagataaatgaatatactatactaaacaaaatatattcgattta 471
Query: 238 tttctgttttaattctactgatactattctgatcttatgcaataatattttatctggatc 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tttctgttttaattctactgatactattctgatcttatgcaataatattttatctggatt 411
Query: 298 aggggaactactttgttcttttcctgtgttttggctcactagatctttactgtcttcttt 357
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 410 aggggaactactttgttcttttcctgtggtttggctcactagatctttactgtcttcttt 351
Query: 358 ttgtcacactcttattgagctattggtttgaagatacaacagtaatgagggaactcttat 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 350 ttgtcacactcttattgagctattggtttgaagatgcaacagtaatgagggaactcttat 291
Query: 418 aaactaagatatttaattggaagattgcttatagtttcgtaggcttaatccattttcatc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaactaagatatttaattggaagattgcttatagtttcgtaggcttaatccattttcatc 231
Query: 478 agagcagggagtatgaaagcagacaggcaaggtgctggagtaagggggtgagggttgtta 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 agagcagggagtatgaaagcagacaggcaaggtgctggagtaagggggtgagggttgtta 171
Query: 538 cctgatcca 546
|||||||||
Sbjct: 170 cctgatcca 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_f17.g1 MSMg01no107_f17.g1 CHROMAT_FILE:
MSMg01no107_f17.g1 PHD_FILE: MSMg01no107_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:08 2005
(331 letters)
>mm_chr4_77278506_77279236
Length = 731
Score = 594 bits (307), Expect = e-174
Identities = 325/331 (98%)
Strand = Plus / Plus
Query: 1 gctttctcactgaaatgtgaaacatctgtctatcaaattgtgatgattatctgctgaatt 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctttctcactgaaatatgaaacatctgtctatcaaattgtgatgattatctgctgaatt 260
Query: 61 ctttcatactcaaattactgccatatgattacaaaatttactgtatttaatttaacaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcatactcaaattactgccatatgattacaaaatttactgtatttaatttaacaata 320
Query: 121 taaaacattgagatcacagccatggtcaaaatgtgtataaatacccctcccatataccta 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 taaaacattgagatcacagccatggtcaaaatgtgtataaatatccctcccatataccta 380
Query: 181 aataaaagatatgcaaatcagtagctgaccacttataaaagagtaaagagataccatcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaaagatatgcaaatcagtagctgaccacttataaaagagtaaagagataccatcta 440
Query: 241 caattcatcagctcaaaaagtactctgcatttaatggtttatgttaaaactataggccat 300
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 441 caattcatcagctcaaaaagtactctgcatttaatggcagaagttaaaactataggccat 500
Query: 301 aggtagtcagatcaatggtatccaagcaatg 331
|||||||||||||||||||||||||||||||
Sbjct: 501 aggtagtcagatcaatggtatccaagcaatg 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
