Query= MSMg01no107_n06.b1 MSMg01no107_n06.b1 CHROMAT_FILE:
MSMg01no107_n06.b1 PHD_FILE: MSMg01no107_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:14 2005
(371 letters)
>mm_chr4_21841062_21841832
Length = 771
Score = 654 bits (338), Expect = 0.0
Identities = 363/374 (97%), Gaps = 6/374 (1%)
Strand = Plus / Minus
Query: 1 tctagatacatcattagcatggagaaccccgtt---ttctatgctatgagattggttgtc 57
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 520 tctagatacatcattagcatggagaacc---ttgggttctatgctatgagattggttgtc 464
Query: 58 atggtcctcttagtggggtgttgtggtcatgtgctcctggtcaggatctagtttgaactc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atggtcctcttagtggggtgttgtggtcatgtgctcctggtcaggatctagtttgaactc 404
Query: 118 ctgccgttctgttatgaaatttaccaggattctgaatttgttaccaccttaccaattttt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctgccgttctgttatgaaatttaccaggattctgaatttgttaccaccttaccaattttt 344
Query: 178 ctatctggtggcatagtctactgccgcacagactgcccctgggtatcccccaaccttgca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctatctggtggcatagtctactgccgcacagactgcccctgggtatcccccaaccttgca 284
Query: 238 gcatcaagtctctgcaggattagtcataacttctcccactgaggccagacaaggttgctc 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 283 gcatcaagtctctgcaggattagtcataacttctcccactgaggccagacaaggtttctc 224
Query: 298 tgttggggaagggattctacttattggctttagggttagccccattccagttgttggggg 357
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 223 tgttggggaagggattctacagacaggctttagggttagccccattccagttgttggggg 164
Query: 358 acccacatggagac 371
||||||||||||||
Sbjct: 163 acccacatggagac 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_n06.g1 MSMg01no107_n06.g1 CHROMAT_FILE:
MSMg01no107_n06.g1 PHD_FILE: MSMg01no107_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:15 2005
(215 letters)
>mm_chr4_21774279_21774893
Length = 615
Score = 400 bits (207), Expect = e-116
Identities = 213/215 (99%)
Strand = Plus / Plus
Query: 1 gttaagaatgctgtgtttcttagaatttttgtttccttttgtaattaaactcctagtctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttaagaatgctgtgtttcttagaatttttgtttccttttgtaattaaactcctagtctg 260
Query: 61 gaaagttgacattttagatatatgaacattgttcacgctaaacaccttttacctcctttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagttgacattttagatatatgaacattgttcacgctaaacaccttttacctcctttc 320
Query: 121 gggaggccatcttggagtttaggtaaggaaggaccagtggaaactctgcttctcagttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaggccatcttggagtttaggtaaggaaggaccagtggaaactctgcttctcagttac 380
Query: 181 ttttccttaaagagtaactgaccgaagttgaactg 215
|||||||||||||||| |||| |||||||||||||
Sbjct: 381 ttttccttaaagagtagctgagcgaagttgaactg 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space: 124836
Effective search space used: 124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
