BAC Information

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BAC

Clone NameMSMg01-107P04
Chromosome4 (Build37)
Map Location 64,905,914 - 64,906,478
singlet/doubletsinglet
Overlap genePappa
Upstream genenone
Downstream geneAstn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107P04.T7 (MSMg01no107_p04.b1)MSMg01-107P04.TJ (MSMg01no107_p04.g1)
ACCAG321531AG321532
length1,3001,290
length of high quality
(start - end)
334 (131 - 464)565 (132 - 696)
definitionCHROMAT_FILE: MSMg01no107_p04.b1 PHD_FILE: MSMg01no107_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:33 2005CHROMAT_FILE: MSMg01no107_p04.g1 PHD_FILE: MSMg01no107_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGGAGTTNNNNNNCGGCATTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCTGTAACCACAAGGACCCCTCATAAGGCAAGCCAACCA
TACGCCCTCATCTCTAACTTCCTTTAAGGACACCTCAGCAAAATAATATT
TCATTTTTTTTTTCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCA
ATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCA
CCCACTCCCCCTTTTTGGCGCTGGTGTTCCCCTGTACTGGGGCATATAAA
GTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCTACTAGGCCAT
CTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGT
TCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGC
TGCTTTCTCTAGCTCCTCCACCGGCAGCCCTATGATCCATCCATTAGCTG
ACTGGGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAA
GAGACAGCCACATCTGGGTCCTTTCAATAAAATCTTGCTAGTGTATGCAA
TGGTGTCAGCGTTTGGATGCTGATTATGGAGCGGATCCCTGGATATGGCA
GTCTCTACATGGCCCATCCTTTCATCCTCAGCTCCCAAACTTTGTCTCTG
TAACCCGCTCCATGGGGTGTTTTGTTTCCCAAATCTAGGGAGGGGCATAG
TGGTCCACATTTTCAGTCTTCCGTACTTCTTGCGTTGTATGCGTTTAGCC
AAATTATGATCCTTAATACCTGGGGAACTCCTAGGATTGGGGGCCTAAAA
TCCCACTTATCACTGGATTACAAACTGGGGGGGAATTTTCCTTGGAGAAT
GGCGTTAACTTACGCCAGGACAGAAGGTCTCTTCCCGGATCTATCACATC
TGGATTATGTAATTTTCCAAAAAAATACATTCTTTCTATATTAGATGGAT
TATCTACCTCCCCTCTTGGGAACGACTCATACCTCGTACTTTTCGTGTAC
TCAACTCTCCCTTGTGTGTAATCGTAAATTCTATGGTTCCTTCTCTAATC
TTGACGGTCCTCATTAATCTCTCAATATGCCTTCTCTGGGAAAAGAAACT
GCGAACTCAGTGGAGACTATCTTGTACAAGATCATGGGTCCGCCATCCTC
TCCTGGTAAACTTACAGTGCTCATTCCTTGGCAGTATATGCTGTTGGTAC
ATCTCTCGAGACACTCTCCTCATGTCTCTTCTGCTTGCTATATGAGCGAA

NCCGGGATCTNNNNAAAAGATGTGAGNCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTTTTAAAGCTCCTCCCAGAGT
CCTTCTTTTTAAAACTACACCCTTTTTTAAAACAAAAACAACCCAGGATT
TTAATCCTAGAAGTTAGACTCCAAAGGCCCTTGGGGTTCATCTAACTCAT
CCTCACCACTTGAGGCTGATGTGTGTGGGAAGGCCTCGTGACTTTGAAAA
AGGTAGCGACCAGAGCCATTTGGTGTCAGGATCCAATGGTGGGGCTCAGA
ACCAGCCCTGCCACAGATGCACCGGCTGCTTCTGCATCAGTCAATTCTAG
GATTCAGGGGGAGGAAGAGGATGAGCCCAAGAGCTGCACTGAATTACCCT
CAGTACGCTATATAATTATGACCTTGCAAATGCTGTCTAGTTCCCAGAAG
GGAAAACTGAGCCTGGGTGGCAGCAGAGAGGTACCCATGGCTACCCAGAT
AGCAGCTTTAGGCTCCAAGCTCCCCAGTGCAACCAGGACACTGGGATCCA
CTTGAGTGCTCTTTTCTCCTTATGTTAAATGTTAGAAAGCAATTTGGCTA
TTGTAATTGGGAAAAGAGAAGGCTTGAGAACCGAGGGTCCCATCACTGAG
CCGTGTTTTTGTTTTGTTTGCTTTTGTTTCTGTTTCTTCGTAGTCGTGAA
TATGGCATGGCAAAGACACAAGCAAGGTGTGTGTGTGTGTGTGCGTGTGT
GCGTGTGTGTGTGTGTACTGTCAATCTCCTCCTTTTTCTTCCCCACCAGA
TAACCATATAACATCATCCCCAACTCTTCTCTCCTTCCCTTAACACAATC
TTTATCTCTCGGTCGCTCACCTCCTCTTCATCTATCCTTTCTTCTCTTCC
TCTACCTAACATCTCCCCCTCCTTTTATATCTTTATCTCATACATCACCT
ACTTCTTTTCATTCTTTTCTACTTGTACCTTACTCTCCTTTCATCACATC
CTCCTACATATTTACTTAATATTCACTTTCCATTCCACCCCCTATATTCA
CCCTTTGTTCTTAACAATCACCTTGTCAACCCCTTATCTCCTCAAAATCC
TATGACTCGCCCACGCCGCTCACACCTACTGATATCATCTCTTACACTAC
TTCTTCTATTCCCTATCATCTTTCACACTCAATCCTACTAATATATCACA
CTCACCTCGCTTACTACTGACTTACACTCCATAATGTTACGCTATTATAG
CTTCTCCACCCTCCCTTTCCCACATCTCTCTTTCTCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_p04.g1 MSMg01no107_p04.g1 CHROMAT_FILE:
MSMg01no107_p04.g1 PHD_FILE: MSMg01no107_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:33 2005
         (565 letters)



>mm_chr4_64905714_64906678
          Length = 965

 Score = 1046 bits (541), Expect = 0.0
 Identities = 559/565 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaaaacaacccaggattttaatcctagaagttagactccaaaggcccttggggttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 acaaaaacaacccaggattttaatcctagaagttagactccaaaggcccttggggttcat 706

                                                                       
Query: 61  ctaactcatcctcaccacttgaggctgatgtgtgtgggaaggcctcgtgactttgaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctaactcatcctcaccacttgaggctgatgtgtgtgggaaggcctcgtgactttgaaaaa 646

                                                                       
Query: 121 ggtagcgaccagagccatttggtgtcaggatccaatggtggggctcagaaccagccctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ggtagcgaccagagccatttggtgtcaggatccaatggtggggctcagaaccagccctgc 586

                                                                       
Query: 181 cacagatgcaccggctgcttctgcatcagtcaattctaggattcagggggaggaagagga 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cacagatgcaccgtctgcttctgcatcagtcaattctaggattcagggggaggaagagga 526

                                                                       
Query: 241 tgagcccaagagctgcactgaattaccctcagtacgctatataattatgaccttgcaaat 300
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 525 tgagcccaagagctgcactgaattaccctcagtacgctagagaattatgaccttgcaaat 466

                                                                       
Query: 301 gctgtctagttcccagaagggaaaactgagcctgggtggcagcagagaggtacccatggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gctgtctagttcccagaagggaaaactgagcctgggtggcagcagagaggtacccatggc 406

                                                                       
Query: 361 tacccagatagcagctttaggctccaagctccccagtgcaaccaggacactgggatccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tacccagatagcagctttaggctccaagctccccagtgcaaccaggacactgggatccac 346

                                                                       
Query: 421 ttgagtgctcttttctccttatgttaaatgttagaaagcaatttggctattgtaattggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttgagtgctcttttctccttatgttaaatgttagaaagcaatttggctattgtaattggg 286

                                                                       
Query: 481 aaaagagaaggcttgagaaccgagggtcccatcactgagccgtgtttttgttttgtttgc 540
           |||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 285 aaaagagaagacttgagaaccaagggtcccatcactgagtcgtgtttttgttttgtttgc 226

                                    
Query: 541 ttttgtttctgtttcttcgtagtcg 565
           |||||||||||||||||||||||||
Sbjct: 225 ttttgtttctgtttcttcgtagtcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)