Query= MSMg01no109_a15.b1 MSMg01no109_a15.b1 CHROMAT_FILE:
MSMg01no109_a15.b1 PHD_FILE: MSMg01no109_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:06 2005
(137 letters)
>mm_chr4_44275384_44275926
Length = 543
Score = 197 bits (102), Expect = 2e-55
Identities = 132/142 (92%), Gaps = 8/142 (5%)
Strand = Plus / Plus
Query: 1 ggtgcagaa-tatttttgaacaa-tgagtcagttgatgaaa-tgtaca-taattagcatc 56
||||||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 201 ggtgcagaagtatttttgaacaaatgagtcagttgatgaaaatgtacaataattagcatc 260
Query: 57 atatttgaataattcaaagagctacatttatacacaataaa-caaacttacctaa-a-an 113
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |
Sbjct: 261 atatttgaataattcaaagagctacatttatacacaatagagcaaacttacctaacaga- 319
Query: 114 aattgtaaaatggccttaactg 135
||||||||||||| ||||||||
Sbjct: 320 aattgtaaaatggtcttaactg 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 543
Length adjustment: 8
Effective length of query: 129
Effective length of database: 535
Effective search space: 69015
Effective search space used: 69015
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no109_a15.g1 MSMg01no109_a15.g1 CHROMAT_FILE:
MSMg01no109_a15.g1 PHD_FILE: MSMg01no109_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:06 2005
(544 letters)
>mm_chr4_44319300_44320237
Length = 938
Score = 986 bits (510), Expect = 0.0
Identities = 533/544 (97%), Gaps = 6/544 (1%)
Strand = Plus / Minus
Query: 1 tctctcacctactaaaagagcaagcaaaaactttcagttgtctggaacccggcactaacc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 738 tctctcacctactaaaagagcaagcaaaaactttcagttgtctggaacccagcactaacc 679
Query: 61 tccagaaccatgaatattttgttctttgtctccagcacatggtagagctgacatatgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tccagaaccatgaatattttgttctttgtctccagcacatggtagagctgacatatgtgc 619
Query: 121 tggtgtctcagactcttcagcgcatcgatctcagttttgactcggggcaaatcactctgt 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgatgtctcagactcttcagcgcatcgatctcagttttgactcggggcaaatcactctgt 559
Query: 181 ttgacaaacattggttcagataagcaacaagctctctggcaagtgtcccgagcatcagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttgacaaacattggttcagataagcaacaagctctctggcaagtgtcccgagcatcagca 499
Query: 241 tcagtttcagcatcagcaactttcatactaggcagctatcactagctctaaaacaaactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ------tcagcatcagcaactttcatactaggcagctatcactagctctaaaacaaactg 445
Query: 301 ctcaaaaaactgaaaagccttgcaaaattagtatcctgaggaatgttataaaggcaaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcaaaaaactgaaaagccttgcaaaattagtatcctgaggaatgttataaaggcaaact 385
Query: 361 caatctgccagtttgcgtgggtggagacgagcaagcacacactaggagtagctgaggact 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 caatctgccagtttgcgtgggtggagacgagcaagcacacaccaggagtagctgaggact 325
Query: 421 cagagaggacccacactgaacgtgggtgactccactcagtaagcctgggcgtggctgaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagagaggacccacactgaacgtgggtgactccactcagtaagcctgggcgtggctgaga 265
Query: 481 taaaggagagtacctcctagccaaggaacgctctgtctcctcgatgccactgaagcacaa 540
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 264 taaaggagagtacctcctagccaaggaacgcactgtctcctcgctgccactgaagcacaa 205
Query: 541 gctc 544
||||
Sbjct: 204 gctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 938
Length adjustment: 10
Effective length of query: 534
Effective length of database: 928
Effective search space: 495552
Effective search space used: 495552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
