Query= MSMg01no109_b02.b1 MSMg01no109_b02.b1 CHROMAT_FILE:
MSMg01no109_b02.b1 PHD_FILE: MSMg01no109_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:08 2005
(484 letters)
>mm_chr4_17917025_17917908
Length = 884
Score = 882 bits (456), Expect = 0.0
Identities = 476/484 (98%), Gaps = 6/484 (1%)
Strand = Plus / Plus
Query: 5 gaattcaggttcctattc-c--caggaagctcacaaccacctaaaaaccagccccggaga 61
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaggttccta--cacatcaggaagctcacaaccacctaaaaaccagccccggaga 260
Query: 62 gtcagatttcttcattaaagcagatacagtgtatcaaccctccagtctgtctctctctcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagatttcttcattaaagcagatacagtgtatcaaccctccagtctgtctctctctcc 320
Query: 122 cacacacatataaataagaagtataatatggcatttaaagaattaagaaagtagagtcct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacacatataaataagaagtataatatggcatttaaagaattaagaaagtagagtcct 380
Query: 182 catctgcttctcccagttgtaagaaactggtcattaagaggatgaattgaagcccggtgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctgcttctcccagttgtaagaaactggtcattaagaggatgaattgaagcccggtgt 440
Query: 242 ggtgatgcacgcctttaatcccagcactcgggaggcagaggcaggtagatttctgagttc 301
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ggtgatgcacgcctttaatcccagcactcgggaggcagaggcaggtggatttctgagttc 500
Query: 302 gaggccagcctggtctacaaagtgagttcgaggccagccagagctacacagagaaaactt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggccagcctggtctacaaagtgagttcgaggccagccagagctacacagagaaaactt 560
Query: 362 gtctaaaaaaaaaaaaaa-ggatgaattgatttgatttcctaatgaaagagaaagacaga 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctaaaaaaaaaaaaaaaggatgaattgatttgatttcctaatgaaagagaaagacaga 620
Query: 421 aagacagagctttgaaggtccctattttgtgaaaagagattttttttttgggtggctaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 aagacagagctttgaaggtccctattttgtgaaaagagattttttttttgggtgggtaag 680
Query: 481 gcag 484
||||
Sbjct: 681 gcag 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_b02.g1 MSMg01no109_b02.g1 CHROMAT_FILE:
MSMg01no109_b02.g1 PHD_FILE: MSMg01no109_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:08 2005
(455 letters)
>mm_chr4_18024336_18025188
Length = 853
Score = 760 bits (393), Expect = 0.0
Identities = 439/455 (96%), Gaps = 2/455 (0%)
Strand = Plus / Minus
Query: 1 aattctttgtgtattttggagacacaccactaaatcttgttctctcttccacttttatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aattctttgtgtattttggagacacaccactaaatcttgttctctcttccacttttatgt 594
Query: 61 atgtttaagtagaaaatgaatttctatgtggtttacgatttttgtacctctaattcctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atgtttaagtagaaaatgaatttctatgtggtttacgatttttgtacctctaattcctaa 534
Query: 121 accaaatcacagatgcctctaatgtttctctagactattcataggactcaactgcattca 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 533 accaaatcacagatgcctctaatatttctctagactattcataggactcaactgcatttg 474
Query: 181 gaagggacatatggtcagggtgaatttgtgtcaaaatatggtttaaggtgcatgtgggtt 240
|||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 473 gaagggacatatggccagggtgaatttatttcaaaatatggtttaaggtgcatgtgagtt 414
Query: 241 tctgtgttctgtgcatagatagtcaggtagcctttggtggatggtccttcatttccctct 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tctctgttctgtgcatagatagtcaggtagcctttggtggatggtccttcatttccctct 354
Query: 301 actgaaaattttccatatgtgaattaaatccccccccagaaaacttctagatatgcaaat 360
|||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| |
Sbjct: 353 actgaaaattttccatatgtaaaataaatcccccccccgaaaacttctagatatgca--t 296
Query: 361 ttgattttatttctgaactagcttctctgttatctaattttctctcttcatgcgaatgac 420
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 295 ttgattttatttctgaactagcttctctgttatctgattttctctcttcatgtgaatgac 236
Query: 421 gtactgtcctcaacattatttttaaaataagactc 455
||||||||||||||||||||||||||||||||||
Sbjct: 235 ttactgtcctcaacattatttttaaaataagactc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 853
Length adjustment: 10
Effective length of query: 445
Effective length of database: 843
Effective search space: 375135
Effective search space used: 375135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
