BAC Information

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BAC

Clone NameMSMg01-109H02
Chromosome4 (Build37)
Map Location 74,783,788 - 74,784,131
singlet/doubletsinglet
Overlap geneLOC636847
Upstream geneFrmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
Downstream gene3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109H02.T7 (MSMg01no109_h02.b1)MSMg01-109H02.TJ (MSMg01no109_h02.g1)
ACCAG322627AG322628
length960716
length of high quality
(start - end)
---344 (87 - 430)
definitionCHROMAT_FILE: MSMg01no109_h02.b1 PHD_FILE: MSMg01no109_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:40 2005CHROMAT_FILE: MSMg01no109_h02.g1 PHD_FILE: MSMg01no109_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATACNNAATAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGGCGGAATTCAACCGTGATTTATCGTATTAGATGAAATCA
TGTTCTTCGTAGGCTCCTATAATATAAATAATACTAGAAAGCAGAGCACA
CTAGATCTCATACATCTGATAAACTGCAGTGGCACACGGTATTGTGAGCT
ATTTCTTGCCAATCACTTCCAGGACGACTGTATTTCTCTATGACAACTTC
TTTAGCCACTGGCTACTATAGTCTACAACCCTTTATGGTCATGTCTACAC
TAAACTATCACATGTTAATCGCCCTGATGTCACTCTAGCGGATAATGTCT
CGATCACTACTTTGCATAGTATACATGCCACGCACAATTAGCAACAACTG
TTTATCTCTTGATGTGTGTATATATAGTACCCCCTTTAAAAGGCCAATAG
ATATTGTTTCGCTCATCCCCCCCCTAAAAACATGTTATAATAACGCTTAC
CATCCGCTCTAGCATCATCACGATTCTCTCATTATAATATAATCCAAACA
CGCACTCCGTAAGCACCGTATCACACCTATAATCAGTCACTACCCCAATT
ATAAACCCATATCCTTTGACCTCCATTTATAACCCCTACCTTATCCCGCT
TATTTCTCTTCTTTTTTTTATCAAAACGCAAACCTCCCTCTCCTTGTGCC
CAATCCTTTTACCATTTAACTCGTTAACCCCTCGCAATATTTTAGCTTNA
TTCTCCTGCCCTCTGCACGCCATATAACCCCTTTTCATTCTCCCTCGTGT
TCCTCCCTTGCCATGTTACGCCTTCCCTCGTTCCCCACCCCTTATTTCCT
TTTTTCCCGACCTGTCCCATTATTTACCTCCTTTCCCGTCTACCCATTTT
AACCCCTCCCCCCCCCCTTTTCCCGCTTTAATCTCCCCCCCCGCCTTTTC
TATATCNCCC
ATATCCNNNNNTACGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGCTTTTTGAT
CTGACATTTGACTGAGTGACTGAATTTATCTGCCTTCTTGTCAAGACACT
TTGCTCTGTCTTCTATTTTGATAAATTGGTGCAAATATATTGGTAAAGAT
ATTCTATCAATTTTTTGTTTGAATTCCTAAAATTTTCAGGTCAATGTTTA
TTTACTTTTGGCCTTTTTATAGAGATTGTTTTTTATTGGGGTTTATTTTT
ATATCTTGAAATATTTTTAATACTTTATTAAACTGTTTGTGTTTTTGAAC
TCTTTATTCTACACTTTCATTTTCATACTCAGTCATGTTTATTAGTGATA
AGTTGAACTTAATGTTTTGTGTATCATTAGCAACTAAGATAGTGTTCTCT
GGGGATATTTCTATGGCAATACTAGGTTTTGGAGAAGAGGCATTGTTTTG
ACTGTTCATATTTACTTGTAATATGACCTAAGTACATGGAGCTAGGGCAT
TAGTAATATATTGATATTCTAATTCTGGGTCTACATTGTTGAGAAAATGT
TCAAACCTCTCTTTCTTTTTACTCTAACATGCCATGTGATTGACCACCTA
TGTGGATGCTGGGGTTCCATGTTTGAGATACAGTGTCGAAGTTACAATAG
GATATTATAAAATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_h02.g1 MSMg01no109_h02.g1 CHROMAT_FILE:
MSMg01no109_h02.g1 PHD_FILE: MSMg01no109_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:40 2005
         (344 letters)



>mm_chr4_74783588_74784331
          Length = 744

 Score =  642 bits (332), Expect = 0.0
 Identities = 341/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggctttttgatctgacatttgactgagtgactgaatttatctgccttcttgtcaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cttggctttttgatctgacatttgactgagtgactgaatttatctgccttcttgtcaaga 485

                                                                       
Query: 61  cactttgctctgtcttctattttgataaattggtgcaaatatattggtaaagatattcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cactttgctctgtcttctattttgataaattggtgcaaatatattggtaaagatattcta 425

                                                                       
Query: 121 tcaattttttgtttgaattcctaaaattttcaggtcaatgtttatttacttttggccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcaattttttgtttgaattcctaaaattttcaggtcaatgtttatttacttttggccttt 365

                                                                       
Query: 181 ttatagagattgttttttattggggtttatttttatatcttgaaatatttttaatacttt 240
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 364 ttatagagattgttttttattggattttatttttatatcttgaaatatttttaatacttt 305

                                                                       
Query: 241 attaaactgtttgtgtttttgaactctttattctacactttcattttcatactcagtcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 attaaactgtttgtgtttttgaactctttattctacactttcattttcatactcagtcat 245

                                                       
Query: 301 gtttattagtgataagttgaacttaatgttttgtgtatcattag 344
           ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 244 gtttattagtgataatttgaacttaatgttttgtgtatcattag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)