BAC Information

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BAC

Clone NameMSMg01-109I16
Chromosome4 (Build37)
Map Location 152,738,320 - 152,738,521
singlet/doubletsinglet
Overlap genenone
Upstream geneChd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833, LOC100042089
Downstream geneAjap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109I16.T7 (MSMg01no109_i16.b1)MSMg01-109I16.TJ (MSMg01no109_i16.g1)
ACCAG322701AG322702
length722949
length of high quality
(start - end)
202 (95 - 296)---
definitionCHROMAT_FILE: MSMg01no109_i16.b1 PHD_FILE: MSMg01no109_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:48 2005CHROMAT_FILE: MSMg01no109_i16.g1 PHD_FILE: MSMg01no109_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCCCCCTATCCCCCTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCAAAGAGGATCCGCGGAATTCCTCTTTTACATTTGAAAGTTGT
TTCTGTGTTTTGAAGATATTTTGAAGGAAACATGAACTTGAACTTGTTAC
CTTTCCCCTGTATTTTTGTTACTTTGATGCTGCTACATAAACACCCAGGA
TGAAAAAGAAAGGGGAGAGAAAATCAGCTGGGCTTAGGCCAGGGCCTCAC
AGGACTTTTAGAGTTAGGTTGACTTGCTGATTTTCAGTCTGATGAGGAAC
CAGGGCCCTGCATTTGTGTTTTTAAAACCAGCTTAACGTCTCCTCTTTGG
TACCTGCTGTTTCTAAAGCAAAGCTTAGCCCAGAGAAGCACTAACAAAGT
GTGTCCAGCTCCAGCTCGCTGCACCCCGGTCTGAATAATGATTACAGCAT
TGGATTTAAACAGCAAGTTTCCCTGGTGATGGATCCAAAACTGCATCATC
CTATAGGTGCATGGTTGGTAGGTCCCAAGGCTCCGTTCTATGTGTATATG
TGGAGCGTCTATGTGTCGCACCATATGCATGGCATGTGCGTCCGAGATTA
ATGGCAGCCACCATTCCCCCCTCTACCAAATTCCTGATTCCCATGATCTT
ATTTTTGAATGTGTTTTGTATTGAAATTATAATATATCACTTTTCTTAAG
GCTACCCCTCTATTAAATAATC
CCCCCGCGACTGCTAGGGGGTAGGCCTGGGCGGGCCGCTCTGGGTTCTAC
AAATGGTGGGGTGACACNNTATAGAATGTTCCCCGCGGAATTCAGAGAAG
GAAGCAGAGAGCAGACAGCCAGAAGCAGCAAGCAGCAAGCAGACAGCAGA
CCGCACGACGCACGAAGCTAGAAGCACGAAGCAAGAAGCAGACAGCAGAT
AGCATGATGCAGTAAGCGAGAAGTAAGAAGACAGAAGTAAGATCGATTGA
AGAATGAAGATCGAAGACCGATCGACGAATGAAGCAATCTCTTTTCTGAG
CTCTCTGATATGTGGATGTATCATCTACGTTGGAATTCGGTCTTAACTCA
AATCGTAACTATGTTATGTTTCATTTTAATCCATTCATATAATCTTCTGT
TTTCTTATCTGGTTGTCCCACGTTCCCGTAGGGCTTCGATATTCCTACTG
TCTGGTTTTCTGTTCCTCTCTCACACCCTTTCTGCGTTTTTAATTGGGTT
TTTATTCATGGTGGTCTTGTTCTTTGTGTGTCCCTCCCTAATTGAGCCTG
GTATTGTTTTGTTTTCATTGATATCCCGGATCCTTACGGCTGTGGTTCGC
CCGGCTTACTTATTATTTTACTTGTATTGAGTATTCTTTTGTCTTTCTGT
GTTTGATGGCCATTTTTTGTATTACTATTTTCGTCCTTTTCGACCGTTCC
CAACTTGTTACCTGTTTTGCTTTTTCTTAACTTCGCCTCGATATCTTATG
AATTTACGTGATCAGCATTAGCCCCATGGTTTGTATGGGTCATAACGTTG
TGGCTCGTTGTTAGCATATGTTGATGGGTAGGGTTTATTTTCTGTGTGTA
GTCCTTATTTCTTTGCATGCCTATGTGTCCTTCGGCGTTATCTTAGTCTC
GGCGGCGCTGGGGCGTGTGTTATCTTCTTCGTCTCCGGATTGCTGGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_i16.b1 MSMg01no109_i16.b1 CHROMAT_FILE:
MSMg01no109_i16.b1 PHD_FILE: MSMg01no109_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:48 2005
         (202 letters)



>mm_chr4_152738120_152738721
          Length = 602

 Score =  352 bits (182), Expect = e-102
 Identities = 197/202 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgtttctgtgttttgaagatattttgaaggaaacatgaacttgaacttgttaccttt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 402 agttgtttctgtgttttgaagatattttaaaggaaacatgaacttgaacttgttaccttt 343

                                                                       
Query: 61  cccctgtatttttgttactttgatgctgctacataaacacccaggatgaaaaagaaaggg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 342 cccctgtatttttgttactttgatgctgctacaaaaacacccaggatgaaaaagaaaggg 283

                                                                       
Query: 121 gagagaaaatcagctgggcttaggccagggcctcacaggacttttagagttaggttgact 180
           ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 282 gagagaaaatccgctgggtttaggccaggacctcacaggacttttagagttaggttgact 223

                                 
Query: 181 tgctgattttcagtctgatgag 202
           ||||||||||||||||||||||
Sbjct: 222 tgctgattttcagtctgatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)