BAC Information

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BAC

Clone NameMSMg01-109K09
Chromosome4 (Build37)
Map Location 9,722,666 - 9,722,906
singlet/doubletsinglet
Overlap genenone
Upstream geneChd7, LOC666782, LOC100039584, 4933402J24Rik, Asph
Downstream geneGdf6, 4930448K20Rik, LOC666840, 1700123O12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109K09.T7 (MSMg01no109_k09.b1)MSMg01-109K09.TJ (MSMg01no109_k09.g1)
ACCAG322780AG322781
length730730
length of high quality
(start - end)
89 (152 - 240)241 (89 - 329)
definitionCHROMAT_FILE: MSMg01no109_k09.b1 PHD_FILE: MSMg01no109_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:57 2005CHROMAT_FILE: MSMg01no109_k09.g1 PHD_FILE: MSMg01no109_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTNNNNNACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCCAGATTCCCACAAGTCAAATAACTTGGCACA
CACCACAGTGAACAAGAGACCCTGTCTCCAACATGGAAGACAAGGCCTCA
GACCTGAGGTTGTCTTCTGGCTTCCATGAACACATGTGTGTGTCTGCCTT
CACATGTGTAAACAGGTGTACACACACACACACACACACAGAGAGAGAGA
GAGAGACAGAGAGAGAGAGAGAGAGAAACATATGTACAAAGATTCTTTTA
AAGAAATGAACTTAATCTATAGCTCTTTTCTTACAAATGAAACAGTCATA
TTATAAAACAGTTGAAATTTTGTTAGGTCAGTACTATTGTGCTAATAATT
TCAAAGATCCAGTATCTTTTAGAAAACCATGACACAGCACACAAGTCATA
TGAAATCACACCTGGTATTTCAGAGTACAACGGAAGGCGTCCATGATGAA
AGTCCTATAAGACTCAAGGCAGTCTGTTAGTCGCTAACTATTGATACTCA
TCCGCGTACATATAGACCATTACATAGACATACATAATTTATCCACCCGT
GCAACCACTTTCTCTGCTCTTTCCTAATCTATCGACTTCTCCCTACATAA
AAAAATCCTGTATCTAGAATTTATTCCAAGTTGTATATTGCATTATTTCT
AAGGTTTCTGTTTTCCCCTCGTCTGTTCCT
ATCATNNNNACTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGGGCCAAAA
CTTGAACAGTAACAAGAACAGAAACTTGGCATTTGGGTCCTCCCCTGTTT
CTGAAATACGGCTCTTGTACTTTCCCTGGAGTGCTGAAGTATTTGAATCA
AGATTGAATTCTAAGGAAACCGATTGGCTCTCCCACAAGCAGGATGGAAG
ATGCGTCACTTTGCGTCAGCAGCATCGCTGAAGGTGTCGCTGGCACCATT
CAAGTCCGATGATCAACTTTCACTTTTGGCTGGTAGGGCTTTGTTATTAG
AGCTCGTTTAAACTAGAATCCTTAGAGTCTCTTTTCGAACAGCACCATCA
GCATCTTTCTTAGCAGCAAAGAGCTCTTTCCCTCCCCCTTGTCTGACCTT
AACAAACCATACCATGTCTATTGGCTGATATGGACTTCCACACAATAGCG
TTGCCAGACTTTTTGAAGTCTTGGTAACTGTAACCCCCCATATGAGAACT
CTGATGAGATACAGGCTTCACAGATGTGTACTGCTTATTTCGCACCCAAA
CACTATTTCTTTTCCCTCATCATCAAATGATAATAAGGTTCTACCTGCCC
CCCTCCCCGGCCCCAACTATATCTCCTAAAATAACCTGCATTGACATCAG
TTTTAAATATCTTGCTTATAAAATCGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_k09.g1 MSMg01no109_k09.g1 CHROMAT_FILE:
MSMg01no109_k09.g1 PHD_FILE: MSMg01no109_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:57 2005
         (241 letters)



>mm_chr4_9722466_9723106
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagggccaaaacttgaacagtaacaagaacagaaacttggcatttgggtcctcccctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagggccaaaacttgaacagtaacaagaacagaaacttggcatttgggtcctcccctgt 260

                                                                       
Query: 61  ttctgaaatacggctcttgtactttccctggagtgctgaagtatttgaatcaagattgaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgaaatacggctcttgtcctttccctggagtgctgaagtatttgaatcaagattgaa 320

                                                                       
Query: 121 ttctaaggaaaccgattggctctcccacaagcaggatggaagatgcgtcactttgcgtca 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaaaggaaaccgattggctctcccacaagcaggatggaagatgcgtcactttgcgtca 380

                                                                       
Query: 181 gcagcatcgctgaaggtgtcgctggcaccattcaagtccgatgatcaactttcacttttg 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagcatcgctgaaggtgtcactggcaccattcaagtccgatgatcaactttcacttttg 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)