BAC Information

Click to search

BAC

Clone NameMSMg01-109K17
Chromosome4 (Build37)
Map Location 12,115,281 - 12,115,566
singlet/doubletsinglet
Overlap genenone
Upstream geneCcne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik
Downstream geneLOC545592, OTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109K17.T7 (MSMg01no109_k17.b1)MSMg01-109K17.TJ (MSMg01no109_k17.g1)
ACCAG322796AG322797
length691689
length of high quality
(start - end)
286 (88 - 373)---
definitionCHROMAT_FILE: MSMg01no109_k17.b1 PHD_FILE: MSMg01no109_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:58 2005CHROMAT_FILE: MSMg01no109_k17.g1 PHD_FILE: MSMg01no109_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTATTTTCTTNNNNCATCXXXXXXXXXXXXXXXXXXXXXXXXXXAATC
CAACGCAGGACCGCGGAATTCTGGTTTCTCCTTGAACAGAAAGCACTCAT
TAAGCAAGGCAATGTGCAGTGAGAGGTAAGTGAATGAGATAAAGAGAAGC
CCTTTGGGTTTCAGAAGCAAACTGCAACATAGCAGGCTCATTGTAAGAAG
TCCCATCAGGATGAAAGGCATTAAAAACCCTATAAAGTGTTACTGTTAGG
GCTTCCCCCCTACCTCCCTTCCTTCTCTCTTCCTTCTCCCAAGTGGGTCA
GTAGGCAAAGTATACCTCCATCCCTGCCCCATTTGTGCACACACAGTGAG
CATAGAGGGAATTTTATAAAAACGTAATGCGCGTGTATATACAAGAAGTG
TTACGGTGTATGGGTGATGATCACAGGAAAATCTTGAGAGACCAGATCTT
TTATGTTCAGACTCCATTTTTGAGAACTTGAACTCAGGTAAACTAACAGG
CAGGTACCTAGCATTAGTTTCCAAGTTACCTCCCAAAAAAACCCAAGCCT
AGCTCTAGTTTCTAGGCTAACCCCAAATAGACCCGTGTCTCCAGGTGTAC
TGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGATATCACAGAGAAAGG
AGCTCCAGTTGAGGAAATGCCTCCTTGACATCCAACTGTAG
CCCATGTGCTAAATACCCAATGTAGTGGGAGCGCTGGAGGCGCCTTTTCT
TACTGTCANGGNGANNNNNNGTTTCCCAAAGAAGGGGGNANNNNNANNNG
NNNNAAGANNNNNNNANGGAAGNGAAGAACCAAGGGACGAGACAGGGGAN
GCAGACNCAGCACAGCAAGAAGCCCAGCAGAACAACACAGGACACAGGAA
NCCACAGANCCNCACAGAGAGAGGCACAGCAGAGAACCCCGGGAACCACG
GCAGGCCTTTTTGCACCAGCAGACNGGCGCCAANCAGCCAGAGGCCAGGA
AGAACCCGCAGGACCAGGCATTTTTCTCCTTTTCCAGAACAACGACACAA
AGGAACAGAACTTTTTTTTTCCTCCCCCCCCCCCACTGGGATAATGCCAA
AGAACTACTTCTAAGCAGATCCTCATCAACAATAAACATATTGACTAGCG
TTTCGCCCTACCTTTGGACGGCGGCCTACAAGTGAAGCAGAAGCAATTGA
GAATTCTTATCAAAGCCGGTTTCGAATATTATAAGTCCGTAGTAATTGAT
CATTCACCAGCATTCGGTTCCTTGTGACATGTTACCTAACCTATTTATTT
GTTCCTGAACAATATAATTAAAACCCTTTGATCTCTTTACATGATCCCCC
AATTTTTTTTTTTTTTAACGGGGCAATACGAACTCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_k17.b1 MSMg01no109_k17.b1 CHROMAT_FILE:
MSMg01no109_k17.b1 PHD_FILE: MSMg01no109_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:58 2005
         (286 letters)



>mm_chr4_12115081_12115766
          Length = 686

 Score =  484 bits (250), Expect = e-141
 Identities = 277/286 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaagcactcattaagcaaggcaatgtgcagtgagaggtaagtgaatgagataaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaagcactcattaagcaaggcaatgtgcagtgagaggtaagtgaatgagataaagaga 260

                                                                       
Query: 61  agccctttgggtttcagaagcaaactgcaacatagcaggctcattgtaagaagtcccatc 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 agccctttgggtttcagaagcaaactgcaacatagcaggctcattataagaagtcccatc 320

                                                                       
Query: 121 aggatgaaaggcattaaaaaccctataaagtgttactgttagggcttcccccctacctcc 180
           |||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||
Sbjct: 321 aggatgaaaggcattaaaaaccctataaagtgatactgttacagcttcccccctacctcc 380

                                                                       
Query: 181 cttccttctctcttccttctcccaagtgggtcagtaggcaaagtatacctccatccctgc 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 381 cttccttctctcttccttctcccaagtgggtaagtaggcaaagtatacctccaaccctgc 440

                                                         
Query: 241 cccatttgtgcacacacagtgagcatagagggaattttataaaaac 286
           ||||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 cccaaatgtgcacacacagtgagcagagagggaattttataaaaac 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)