BAC Information

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BAC

Clone NameMSMg01-109L18
Chromosome4 (Build37)
Map Location 64,636,651 - 64,636,916
singlet/doubletsinglet
Overlap genenone
Upstream geneTnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109L18.T7 (MSMg01no109_l18.b1)MSMg01-109L18.TJ (MSMg01no109_l18.g1)
ACCAG322844AG322845
length731764
length of high quality
(start - end)
251 (86 - 336)270 (83 - 352)
definitionCHROMAT_FILE: MSMg01no109_l18.b1 PHD_FILE: MSMg01no109_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:04 2005CHROMAT_FILE: MSMg01no109_l18.g1 PHD_FILE: MSMg01no109_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTGGTNNNCTGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTTGTTCTTTTCCGAACCCCATTTTTTAATGG
GGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTG
GATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATC
TGTTGGTGGTCTTTTTGTCTTATTGACGGCGTCTTTTGCCTTGCAGAAAC
TTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAA
GCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCTCATATCTTCAAG
GCTTTTCCCCACTTTCTCCTCTATATGTTTTTTTCCCCCTCCCCCCCATG
TGAAGTTCCTTGATCCCTCTAGATTCGATCCTCCTATAAATAAATAACCA
CGGATTGATTCTTGTTCTTTTACATGATACCCTTTTTCCTGTTCTATCCC
CTTTTGCCGTCTTTGCCGTTCTTTCTTCTTTATGGACCATCTTCCTCCTT
TGCTCCTATACTTACGCCTACACCATTTTTCCCTTTCCTCCGCCCCTCCT
TTCCCTTTCTCCCCGTTTTCCCTTCTTGTCCCTTCCCCCCCCCCTCTTTC
TTTTTCCCACTTCTGTTTTCCCTTCTCCCTCCTTTTCCCGTCTCCCCCTC
TTCCCCTTTACCCCCCCCCCTTTCCTTCCCC
NCCCNNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCAGCCTTACTCTAA
TGAGATGGGAGACTGAGACAGAAGCATCCACAGAAATTTACAGCCCAAGT
AAGCCAGGATACACAGAACAAAGAAACAAGAGAGACACTGCTTAACAAGA
AGACACTGCTTAACAAGAGAGACACTGCTTAACAAGAAGAGAGCAAATCC
TAGAAAGCTGTCTTCTGACCATCACCCAGATCTCATGGAAGACACATACA
AAGAGAGTGGTTGGGGGAGGTGGGAGGAGAGGGAAAGAGAGAGAGAGGTC
NTGAGAGAGATCCCTCTTCTAGATCTCAACCCTCCTCGACTAACATGCTC
TGCAGGTTTCCCTTCTGATACCCTACCCCACCACCGAAATATAAAATTCC
TAATCGCGCCGTCGAGAACTGTCTATGAAGGAGCTCTTCTCATCTCTTAC
CAATCATCTTCATTTTTCTCCCACTTCTCCTGGTCTGGTCGGCTCTCCCC
ATCTTGGTACAGCNCCTGCATGTGTCCCGCATGAAGAAGCTCCTATTTTG
TGCACGCTTCTTTTGTCCCTACCCCTCTTCTTTGAACCCTGTTATAAAAC
CTGTACCTCTGGGTCCCCAGTATTTCAGTGTCCTCCTTTGTCTTATCACC
GCCTTTTATGTTTCTCTCCCGCCTACCTTTCTTTGTTTTCTCTCATCTTT
TTGTGTTTCTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_l18.g1 MSMg01no109_l18.g1 CHROMAT_FILE:
MSMg01no109_l18.g1 PHD_FILE: MSMg01no109_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:04 2005
         (270 letters)



>mm_chr4_64636451_64637120
          Length = 670

 Score =  468 bits (242), Expect = e-136
 Identities = 260/266 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagcagccttactctaatgagatgggagactgagacagaagcatccacagaaatttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagcagccttactctaatgagatgggagactgagacagaagcatccacagaaatttaca 260

                                                                       
Query: 61  gcccaagtaagccaggatacacagaacaaagaaacaagagagacactgcttaacaagaag 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gcccaagtaagccaggatacacagaacaaagaaccaagagagacactgcttaacaagaag 320

                                                                       
Query: 121 acactgcttaacaagagagacactgcttaacaagaagagagcaaatcctagaaagctgtc 180
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 acactgtttaacaagagagacactgcttaacaagaagagaacaaatcctagaaagctgtc 380

                                                                       
Query: 181 ttctgaccatcacccagatctcatggaagacacatacaaagagagtggttgggggaggtg 240
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ttctgaccatcactcagatctcatggaagacacatacaaagagagtggttgggggagggg 440

                                     
Query: 241 ggaggagagggaaagagagagagagg 266
           ||||||||||||||| ||||||||||
Sbjct: 441 ggaggagagggaaagggagagagagg 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)