BAC Information

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BAC

Clone NameMSMg01-109N10
Chromosome4 (Build37)
Map Location 39,560,234 - 39,560,395
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665520, LOC100039487, 1700009N14Rik
Downstream geneLOC435775, LOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109N10.T7 (MSMg01no109_n10.b1)MSMg01-109N10.TJ (MSMg01no109_n10.g1)
ACCAG322922AG322923
length737705
length of high quality
(start - end)
166 (89 - 254)450 (90 - 539)
definitionCHROMAT_FILE: MSMg01no109_n10.b1 PHD_FILE: MSMg01no109_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:12 2005CHROMAT_FILE: MSMg01no109_n10.g1 PHD_FILE: MSMg01no109_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTCTTTAATATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCGCTCCTTTACCGAATTCCTCTGTTTCCTTGCTTT
ACCAGGATCAGCAGGACCACCATCGTTTCTAAATATCCAAAGCAAACAAT
AGTGCACACACCCTTCCATTTCATCTAGGAAATAGACATAGATCACAAAA
CAAAAAAAGTTGTTACATGAGTACACAGCCCACAATCGAAGGACCTTTCA
TAGATATAATCGCTAGTAATTTTGACTAGAATTAGTTGAAAACCATTATG
AAAGAAAAAGTGCTACATAACATGCTTCTAATCTATGGCTGTACCATTTT
GTTGCCTTTTAACACGATGTATCCTTGTTCTGCCCCCCCCCGTTGTTGCT
CCTAAAGAGCGTTGGCCACTATCAAAGCCCTACTGATATATAATATACAA
CCCCCCTCGAGAACGGTTCCACCTATAATTCAAACCCTATAACCGCACTT
TCCTCATGATCCCTCCTTACCAGCTACTTAATTTTGTTTACCCACGCCCC
CGTTCCCTTTTATACATGACCCATACGCCCTGTATCGCTTTCAACCCTCC
CCCGTTACCCTTCATCCGCTTATCCCCTTCCTTTACCGTCCCCAACACCC
GCTTACTTTACCACATACTTTTTTCTCCTTTCTATACCCATAACCATACC
GCCTCTTCCCCATTTCCCCCCCCCCTTTCCATTCCCA
TTTTTTTTATTTTNNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACAGTTGAT
AAACAACTTCAGCAATGTGGCCGGATACAAAATTAACTTAAACAAATCAG
TAGCCTTCCTATACTCAAAGTATAAACAGGCAGAGAAAGAAATTAGGGAA
ACAACACCCTTAGTAATAGTCACAAACAACATAAAGTATCTTGGGGTGAC
TCTAACCAAACAAGAGAAAGATCTGTATGACAAGAATTTCAAGTCTCTGA
AGAAAGAAATCAAAAATAGAAAGACCTCCCATGCTCATGGATTGGCAGGA
TTAATATAGTAAAAATGGCCATAGTGCCAATAGCAACTACAGATTCAATG
GAATTCCCATCAAATTTTGAACTCAATTCTTCATAGAGTTAGAAAGAGCA
ATTTGCAAATTCATTGGGAATAACAAAACACCCAGGATAGTGAAAACTAT
TCTCAACAATAAAAGAACTTCTGGGGGAATCACCTTCCCTGACCCAAGTT
GTACTACAGAGCAGTTGCTTTAAAAACTTCATGGCATTGGTACAGTGACA
GGCAGGTAGATCAATGGAGTAGAATTGAAGACCCAGAAATGTATCTACCC
ACCCCTGTGTCTTCTGATCTTTGACTAAGGATTTAAACACATCCTGTGTA
AAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_n10.b1 MSMg01no109_n10.b1 CHROMAT_FILE:
MSMg01no109_n10.b1 PHD_FILE: MSMg01no109_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:12 2005
         (166 letters)



>mm_chr4_39560034_39560595
          Length = 562

 Score =  271 bits (140), Expect = 2e-77
 Identities = 158/166 (95%), Gaps = 4/166 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccttgctttaccaggatcagcaggaccaccatcgtttctaaatatccaaagcaaaca 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tttccttgctttaccaggatcagcaggaccaccatcgtttttaaatatccaaagcaaaca 260

                                                                       
Query: 61  atagtgcacacacccttccatttcatctaggaaatagacatagatcacaaaacaaaaaaa 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 261 atagtgcaaacacccttccatttcatctaggaaatagacatagatcacaaaa----aaaa 316

                                                         
Query: 121 gttgttacatgagtacacagcccacaatcgaaggacctttcataga 166
           |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 317 gttgttacatgagtacacagtcaacaatcgaaggacctttcataga 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 562
Length adjustment: 8
Effective length of query: 158
Effective length of database: 554
Effective search space:    87532
Effective search space used:    87532
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)